occ_download_get

[jessica-982023]

[

Session Info

In occ_occurance_ git i am having the same issue as #422

[sckott]

Please share your R session info, the output of sessionInfo() AFTER loading rgbif in the R session

[oflora]

Hi,

I get the same error in a script that worked a few months ago.
The following code:

gbif_key <- name_backbone("Limonium dufourii")

gbif_occ <- occ_download(pred("taxonKey", gbif_key$usageKey))
gbif_occ <- occ_download_get(gbif_occ)

returns:

Error in occ_download_get(gbif_occ) : 
  response content-type != application/octet-stream; q=0.5

Session Info

R version 3.6.3 (2020-02-29)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.2 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=es_ES.UTF-8       
 [4] LC_COLLATE=en_US.UTF-8     LC_MONETARY=es_ES.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=es_ES.UTF-8       LC_NAME=C                  LC_ADDRESS=C              
[10] LC_TELEPHONE=C             LC_MEASUREMENT=es_ES.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] rgbif_3.5.2

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.6        pillar_1.6.1      compiler_3.6.3    plyr_1.8.6        tools_3.6.3      
 [6] uuid_0.1-4        jsonlite_1.7.2    lifecycle_1.0.0   tibble_3.1.2      gtable_0.3.0     
[11] pkgconfig_2.0.3   rlang_0.4.11      rstudioapi_0.13   cli_2.5.0         DBI_1.1.1        
[16] curl_4.3.1        crul_1.1.0        wellknown_0.7.2   dplyr_1.0.6       httr_1.4.2       
[21] stringr_1.4.0     xml2_1.3.2        generics_0.1.0    vctrs_0.3.8       triebeard_0.3.0  
[26] grid_3.6.3        tidyselect_1.1.1  httpcode_0.3.0    glue_1.4.2        data.table_1.14.0
[31] R6_2.5.0          oai_0.3.2         fansi_0.4.2       conditionz_0.1.0  ggplot2_3.3.3    
[36] purrr_0.3.4       magrittr_2.0.1    whisker_0.4       urltools_1.7.3    scales_1.1.1     
[41] ellipsis_0.3.2    assertthat_0.2.1  colorspace_2.0-1  utf8_1.2.1        stringi_1.6.2    
[46] wk_0.4.1          lazyeval_0.2.2    munsell_0.5.0     crayon_1.4.1     

Thanks for everything! :)

[jessicat22]

Here is my session info @sckott
R version 4.1.0 (2021-05-18)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19041)

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252

attached base packages:
[1] stats graphics grDevices utils datasets methods base

other attached packages:
[1] rgbif_3.5.3.93 dplyr_1.0.6 geosphere_1.5-10 rgeos_0.5-5 sp_1.4-5
[6] red_1.5.0 lwgeom_0.2-6 sf_0.9-8

loaded via a namespace (and not attached):
[1] nlme_3.1-152 oai_0.3.2 webshot_0.5.2 progress_1.2.2
[5] httr_1.4.2 tools_4.1.0 utf8_1.2.1 rgdal_1.5-23
[9] R6_2.5.0 vegan_2.5-7 KernSmooth_2.23-20 DBI_1.1.1
[13] lazyeval_0.2.2 mgcv_1.8-35

[sckott]

Thanks both

[sckott]

Please try again after reinstalling like remotes::install_github("ropensci/rgbif") and let me know if it works now

[oflora]

Now it works, thanks

[sckott]

great!