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main.yml
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on:
push:
pull_request:
# for now, CRON jobs only run on the default branch of the repo (i.e. usually on master)
schedule:
# * is a special character in YAML so you have to quote this string
- cron: "0 3 * * *"
name: R CMD Check via {tic}
jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: false
matrix:
config:
# comment out lines if you do not want to build on certain platforms
- { os: windows-latest, r: "release" }
- { os: macOS-latest, r: "release" }
- { os: macOS-latest, r: "devel" }
- { os: ubuntu-latest, r: "release" }
env:
# otherwise remotes::fun() errors cause the build to fail. Example: Unavailability of binaries
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
CRAN: ${{ matrix.config.cran }}
# we are not allowed to write to ~/.ccache on GH Actions
# setting some ccache options
CCACHE_BASEDIR: ${{ GITHUB.WORKSPACE }}
CCACHE_DIR: ${{ GITHUB.WORKSPACE }}/.ccache
CCACHE_NOHASHDIR: true
CCACHE_SLOPPINESS: include_file_ctime
# make sure to run `tic::use_ghactions_deploy()` to set up deployment
TIC_DEPLOY_KEY: ${{ secrets.TIC_DEPLOY_KEY }}
# codecov API KEY to upload covr results. Query repo-specific token via https://codecov.io/gh/<owner>/<repo>/settings
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
# prevent rgl issues because no X11 display is available
RGL_USE_NULL: true
steps:
- uses: actions/checkout@v1
- uses: r-lib/actions/setup-r@master
with:
r-version: ${{ matrix.config.r }}
Ncpus: 4
# LaTeX. Installation time:
# Linux: ~ 1 min
# macOS: ~ 1 min 30s
# Windows: never finishes
- uses: r-lib/actions/setup-tinytex@v1
if: runner.os != 'Windows'
- uses: r-lib/actions/setup-pandoc@master
# set date/week for use in cache creation
# https://github.community/t5/GitHub-Actions/How-to-set-and-access-a-Workflow-variable/m-p/42970
# - cache R packages daily
# - cache ccache weekly -> 'ccache' helps rebuilding the package cache faster
- name: "[Cache] Prepare daily timestamp for cache"
if: runner.os != 'Windows'
id: date
run: echo "::set-output name=date::$(date '+%d-%m')"
- name: "[Cache] Prepare weekly timestamp for cache"
if: runner.os != 'Windows'
id: datew
run: echo "::set-output name=datew::$(date '+%Y-%V')"
- name: "[Cache] Cache R packages"
if: runner.os != 'Windows'
uses: pat-s/always-upload-cache@v1.1.4
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}}
restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}}
- name: "[Cache] Cache ccache"
if: runner.os != 'Windows'
uses: pat-s/always-upload-cache@v1.1.4
with:
path: ${{ env.CCACHE_DIR}}
key: ${{ runner.os }}-r-${{ matrix.config.r }}-ccache-${{steps.datew.outputs.datew}}
restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-ccache-${{steps.datew.outputs.datew}}
# install ccache and write config file
- name: "[Linux] ccache"
if: runner.os == 'Linux'
run: |
sudo apt install ccache libcurl4-openssl-dev
mkdir -p ~/.R && echo -e 'CXX_STD = CXX14\n\nCC=ccache gcc -std=gnu99\nCXX=ccache g++\nCXX11=ccache g++ -std=gnu99\nCXX14=ccache g++ -std=gnu99\nC11=ccache g++\nC14=ccache g++\nFC=ccache gfortran\nF77=ccache gfortran' > $HOME/.R/Makevars
# install ccache and write config file
# mirror the setup described in https://github.com/rmacoslib/r-macos-rtools
- name: "[macOS] ccache"
if: runner.os == 'macOS' && matrix.config.r != 'devel'
run: |
brew install ccache
wget https://cran.r-project.org/bin/macosx/tools/clang-7.0.0.pkg
sudo installer -package clang-7.0.0.pkg -target /
mkdir -p ~/.R && echo -e 'CXX_STD = CXX14\n\nCC=ccache /usr/local/clang7/bin/clang\nCC11=ccache /usr/local/clang7/bin/clang\nCC14=ccache /usr/local/clang7/bin/clang\nCXX=ccache /usr/local/clang7/bin/clang++\nCXX11=ccache /usr/local/clang7/bin/clang++\nCXX14=ccache /usr/local/clang7/bin/clang++\nC11=ccache /usr/local/clang7/bin/clang++\nC14=ccache /usr/local/clang7/bin/clang++\nF77=ccache gfortran/nCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk\nCXXFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk\nCCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk\nCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk' > $HOME/.R/Makevars
R CMD javareconf
# install ccache and write config file
# mirror the setup described in https://github.com/rmacoslib/r-macos-rtools
- name: "[macOS-devel] ccache"
if: runner.os == 'macOS' && matrix.config.r == 'devel'
run: |
brew install ccache
wget https://cran.r-project.org/bin/macosx/tools/clang-8.0.0.pkg
sudo installer -package clang-8.0.0.pkg -target /
mkdir -p ~/.R && echo -e 'CXX_STD = CXX14\n\nCC=ccache /usr/local/clang8/bin/clang\nCC11=ccache /usr/local/clang8/bin/clang\nCC14=ccache /usr/local/clang8/bin/clang\nCXX=ccache /usr/local/clang8/bin/clang++\nCXX11=ccache /usr/local/clang8/bin/clang++\nCXX14=ccache /usr/local/clang8/bin/clang++\nC11=ccache /usr/local/clang8/bin/clang++\nC14=ccache /usr/local/clang8/bin/clang++\nF88=ccache gfortran/nCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk\nCXXFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk\nCCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk\nCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk' > $HOME/.R/Makevars
R CMD javareconf
# for some strange Windows reason this step and the next one need to be decoupled
- name: "[Stage] Prepare"
run: |
Rscript -e "if (!requireNamespace('remotes')) install.packages('remotes', type = 'source')"
Rscript -e "if (getRversion() < '3.2' && !requireNamespace('curl')) install.packages('curl', type = 'source')"
- name: "[Stage] Install"
if: matrix.config.os != 'macOS-latest' || matrix.config.r != 'devel'
run: Rscript -e "remotes::install_github('ropensci/tic')" -e "print(tic::dsl_load())" -e "tic::prepare_all_stages()" -e "tic::before_install()" -e "tic::install()"
# macOS devel needs its own stage because we need to work with an options to suppress the usage of binaries
- name: "[Stage] Prepare & Install (macOS-devel)"
if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'devel'
run: |
echo -e 'options(pkgType = "source", repos = structure(c(CRAN = "https://cloud.r-project.org/")))' > $HOME/.Rprofile
Rscript -e "remotes::install_github('ropensci/tic')" -e "print(tic::dsl_load())" -e "tic::prepare_all_stages()" -e "tic::before_install()" -e "tic::install()"
- name: "[Stage] Script"
run: Rscript -e 'tic::script()'
- name: "[Stage] After Success"
if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'release'
run: Rscript -e "tic::after_success()"
- name: "[Stage] Upload R CMD check artifacts"
if: failure()
uses: actions/upload-artifact@master
with:
name: ${{ runner.os }}-r${{ matrix.config.r }}-results
path: check
- name: "[Stage] Before Deploy"
if: runner.os != 'Windows'
run: |
Rscript -e "tic::before_deploy()"
- name: "[Stage] Deploy"
if: runner.os != 'Windows'
run: Rscript -e "tic::deploy()"
- name: "[Stage] After Deploy"
if: runner.os != 'Windows'
run: Rscript -e "tic::after_deploy()"