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csblast-2.2.3 missing #52

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nongbaoting opened this issue Aug 3, 2021 · 1 comment
Closed

csblast-2.2.3 missing #52

nongbaoting opened this issue Aug 3, 2021 · 1 comment

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@nongbaoting
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nongbaoting commented Aug 3, 2021 •
edited

when running ../run_pyrosetta_ver.sh input.fa . encouter error !

more make_ss.stderr
/training/nong/protein/RoseTTAFold/input_prep/make_ss.sh: line 11: /training/nong/protein/RoseTTAFold/csblast-2.2.3/bi
n/csbuild: No such file or directory
[makemat] FATAL ERROR: Unable to open file t000_.msa0.tmp.chk

Bad psipred pass1 file format!
rm: cannot remove '/training/nong/protein/RoseTTAFold/example2/t000_.msa0.a3m.csb.hhblits.ss2': No such file or direct
ory

It seems csblast was not in the install folder
@neilfleckSCRI
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neilfleckSCRI commented Aug 3, 2021 •
edited

Try running this from theRoseTTAFold folder:

./install_dependencies.sh

That'll install csblast and the other necessary dependencies:

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@nongbaoting @neilfleckSCRI