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rraadd88/README.md

Systems biology

parag🎆Interactive visualization of higher-order graphs in Python

build Issues

chrov🧬Chromosome Visualizations

build Issues Downloads GNU License

Synthetic biology

beditor🔂A workflow for designing libraries of sgRNAs for CRISPR base editing

build Issues Downloads GNU License

Single-cell imaging

htsimaging🔬Python package for high-throughput single-cell imaging analysis

build Issues Downloads GNU License

Machine learning

interpretable🧰Interpretable machine learning toolbox

Downloads

Bioinformatics

dseq🧱Deep sequencing analysis in dataframes

build Issues Downloads GNU License

General-purpose toolbox

roux 🧰Convenience functions in Python

build Issues Downloads GNU License

⬆️Solo-coding

⬇️Collaborative coding:

safepy🕸️Python implementation of Spatial Analysis of Functional Enrichment (SAFE)

SGAtools(🇷)One-stop analysis and visualization of array-based genetic interaction screens

removestar*️⃣Tool to automatically replace 'import *' in Python files with explicit imports

yeast_segmentation🔬User friendly mask-rcnn segmentation for images of yeast cells

Pinned

  1. beditor beditor Public

    A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more

    Python 14 4

  2. htsimaging htsimaging Public

    🔬Python package for high-throughput single-cell imaging analysis.

    Python 5 1

  3. roux roux Public

    🧰Convenience functions in Python.

    Python 2

  4. baryshnikova-lab/safepy baryshnikova-lab/safepy Public

    Python implementation of Spatial Analysis of Functional Enrichment (SAFE)

    Python 37 22

  5. chrov chrov Public

    🧬Chromosome Visualizations

    Python 2

  6. asmeurer/removestar asmeurer/removestar Public

    Tool to automatically replace 'import *' in Python files with explicit imports

    Python 164 9