NAMESPACE

# Generated by roxygen2: do not edit by hand

export("mindist<-")
export("nMAD<-")
export("offspringNames<-")
export("pedigree<-")
export(DNAcopyParam)
export(FilterParamMD)
export(MAP)
export(MAP2)
export(MDRanges)
export(MinDistExperiment)
export(MinDistGRanges)
export(MinDistParam)
export(ParentOffspring)
export(ParentOffspringList)
export(Pedigree)
export(PennParam)
export(TrioSet)
export(TrioSetList)
export(TrioSetListLD)
export(acf2)
export(calculateMindist)
export(denovo)
export(denovoDuplication)
export(denovoHemizygous)
export(denovoHomozygous)
export(father)
export(filterExperiment)
export(mad2)
export(mdLegend)
export(mindist)
export(mother)
export(nMAD)
export(offspring)
export(offspringNames)
export(pedigree)
export(pedigreeGrid)
export(pedigreeName)
export(pedigreeViewports)
export(plotDenovo)
export(segment2)
export(trios)
exportClasses(FilterParamMD)
exportClasses(MDRanges)
exportClasses(MinDistExperiment)
exportClasses(MinDistGRanges)
exportClasses(MinDistParam)
exportClasses(MinDistPosterior)
exportClasses(ParentOffspring)
exportClasses(ParentOffspringList)
exportClasses(Pedigree)
exportClasses(TrioSet)
exportClasses(TrioSetList)
exportMethods(show)
exportMethods(stack)
import(Biobase)
import(BiocGenerics)
import(DNAcopy)
import(GenomeInfoDb)
import(GenomicRanges)
import(IRanges)
import(S4Vectors)
import(SummarizedExperiment)
import(VanillaICE)
import(ff)
import(foreach)
import(grid)
import(lattice)
import(methods)
import(oligoClasses)
importFrom(data.table,fread)
importFrom(matrixStats,colMads)
importFrom(matrixStats,colMedians)
importFrom(matrixStats,rowMads)
importFrom(stats,acf)
importFrom(stats,dnorm)
importFrom(stats,lowess)
importFrom(stats,pnorm)
importFrom(stats,setNames)
importFrom(utils,data)
importFrom(utils,packageDescription)
importFrom(utils,packageVersion)
importFrom(utils,read.delim)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)