inst/rmd/h/default.html

<!DOCTYPE html>

<html$if(lang)$ lang="$lang$" xml:lang="$lang$"$endif$>

<head>

<meta charset="utf-8" />
<meta name="generator" content="pandoc" />
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />

$if(theme)$
$else$
<meta name="viewport" content="width=device-width, initial-scale=1" />
$endif$

$for(author-meta)$
<meta name="author" content="$author-meta$" />
$endfor$

$if(date-meta)$
<meta name="date" content="$date-meta$" />
$endif$

<title>$if(title-prefix)$$title-prefix$ - $endif$$pagetitle$</title>

$for(header-includes)$
$header-includes$
$endfor$
$if(shiny-prerendered)$
<!-- HEAD_CONTENT -->
$endif$

<style type="text/css">
  code{white-space: pre-wrap;}
  span.smallcaps{font-variant: small-caps;}
  span.underline{text-decoration: underline;}
  div.column{display: inline-block; vertical-align: top; width: 50%;}
  div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
  ul.task-list{list-style: none;}
  $if(quotes)$
  q { quotes: "“" "”" "‘" "’"; }
  $endif$
  $if(displaymath-css)$
  .display.math{display: block; text-align: center; margin: 0.5rem auto;}
  $endif$
</style>

$if(highlightjs)$
<style type="text/css">code{white-space: pre;}</style>
<script type="text/javascript">
if (window.hljs) {
  hljs.configure({languages: []});
  hljs.initHighlightingOnLoad();
  if (document.readyState && document.readyState === "complete") {
    window.setTimeout(function() { hljs.initHighlighting(); }, 0);
  }
}
</script>
$endif$

$if(highlighting-css)$
<style type="text/css">
  code {
    white-space: pre;
  }
  .sourceCode {
    overflow: visible;
  }
</style>
<style type="text/css" data-origin="pandoc">
$highlighting-css$

$if(code_folding)$
.sourceCode .row {
  width: 100%;
}
.sourceCode {
  overflow-x: auto;
}
.code-folding-btn {
  margin-right: -30px;
}
$endif$
</style>
<script>
// apply pandoc div.sourceCode style to pre.sourceCode instead
(function() {
  var sheets = document.styleSheets;
  for (var i = 0; i < sheets.length; i++) {
    if (sheets[i].ownerNode.dataset["origin"] !== "pandoc") continue;
    try { var rules = sheets[i].cssRules; } catch (e) { continue; }
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      var rule = rules[j];
      // check if there is a div.sourceCode rule
      if (rule.type !== rule.STYLE_RULE || rule.selectorText !== "div.sourceCode") continue;
      var style = rule.style.cssText;
      // check if color or background-color is set
      if (rule.style.color === '' && rule.style.backgroundColor === '') continue;
      // replace div.sourceCode by a pre.sourceCode rule
      sheets[i].deleteRule(j);
      sheets[i].insertRule('pre.sourceCode{' + style + '}', j);
    }
  }
})();
</script>
$endif$

$if(abstract)$
<style type="text/css">
  p.abstract{
    text-align: center;
    font-weight: bold;
  }
  div.abstract{
    margin: auto;
    width: 90%;
  }
</style>
$endif$

$if(source_embed)$
<style type="text/css">
#rmd-source-code {
  display: none;
}
</style>
$endif$

$if(csl-css)$
<style type="text/css">
/* for pandoc --citeproc since 2.11 */
div.csl-bib-body { }
div.csl-entry {
  clear: both;
$if(csl-entry-spacing)$
  margin-bottom: $csl-entry-spacing$;
$endif$
}
.hanging div.csl-entry {
  margin-left:2em;
  text-indent:-2em;
}
div.csl-left-margin {
  min-width:2em;
  float:left;
}
div.csl-right-inline {
  margin-left:2em;
  padding-left:1em;
}
div.csl-indent {
  margin-left: 2em;
}
</style>
$endif$

$for(css)$
<link rel="stylesheet" href="$css$" $if(html5)$$else$type="text/css" $endif$/>
$endfor$


$if(theme)$
<style type = "text/css">
.main-container {
  max-width: 940px;
  margin-left: auto;
  margin-right: auto;
}
img {
  max-width:100%;
}
.tabbed-pane {
  padding-top: 12px;
}
.html-widget {
  margin-bottom: 20px;
}
button.code-folding-btn:focus {
  outline: none;
}
summary {
  display: list-item;
}
pre code {
  padding: 0;
}
</style>

$if(kable-scroll)$
<style type="text/css">
.kable-table {
  border: 1px solid #ccc;
  border-radius: 4px;
  overflow: auto;
  padding-left: 8px;
  padding-right: 8px;
  margin-bottom: 20px;
  max-height: 350px;
}

.kable-table table {
  margin-bottom: 0px;
}

.kable-table table>thead>tr>th {
  border: none;
  border-bottom: 2px solid #dddddd;
}

.kable-table table>thead {
  background-color: #fff;
}
</style>
$endif$

$if(navbar)$
<style type="text/css">
.dropdown-submenu {
  position: relative;
}
.dropdown-submenu>.dropdown-menu {
  top: 0;
  left: 100%;
  margin-top: -6px;
  margin-left: -1px;
  border-radius: 0 6px 6px 6px;
}
.dropdown-submenu:hover>.dropdown-menu {
  display: block;
}
.dropdown-submenu>a:after {
  display: block;
  content: " ";
  float: right;
  width: 0;
  height: 0;
  border-color: transparent;
  border-style: solid;
  border-width: 5px 0 5px 5px;
  border-left-color: #cccccc;
  margin-top: 5px;
  margin-right: -10px;
}
.dropdown-submenu:hover>a:after {
  border-left-color: #adb5bd;
}
.dropdown-submenu.pull-left {
  float: none;
}
.dropdown-submenu.pull-left>.dropdown-menu {
  left: -100%;
  margin-left: 10px;
  border-radius: 6px 0 6px 6px;
}
</style>

<script type="text/javascript">
// manage active state of menu based on current page
$$(document).ready(function () {
  // active menu anchor
  href = window.location.pathname
  href = href.substr(href.lastIndexOf('/') + 1)
  if (href === "")
    href = "index.html";
  var menuAnchor = $$('a[href="' + href + '"]');

  // mark it active
  menuAnchor.tab('show');

  // if it's got a parent navbar menu mark it active as well
  menuAnchor.closest('li.dropdown').addClass('active');

  // Navbar adjustments
  var navHeight = $$(".navbar").first().height() + 15;
  var style = document.createElement('style');
  var pt = "padding-top: " + navHeight + "px; ";
  var mt = "margin-top: -" + navHeight + "px; ";
  var css = "";
  // offset scroll position for anchor links (for fixed navbar)
  for (var i = 1; i <= 6; i++) {
    css += ".section h" + i + "{ " + pt + mt + "}\n";
  }
  style.innerHTML = "body {" + pt + "padding-bottom: 40px; }\n" + css;
  document.head.appendChild(style);
});
</script>
$endif$

<!-- tabsets -->

<style type="text/css">
.tabset-dropdown > .nav-tabs {
  display: inline-table;
  max-height: 500px;
  min-height: 44px;
  overflow-y: auto;
  border: 1px solid #ddd;
  border-radius: 4px;
}

.tabset-dropdown > .nav-tabs > li.active:before {
  content: "";
  font-family: 'Glyphicons Halflings';
  display: inline-block;
  padding: 10px;
  border-right: 1px solid #ddd;
}

.tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
  content: "&#xe258;";
  border: none;
}

.tabset-dropdown > .nav-tabs.nav-tabs-open:before {
  content: "";
  font-family: 'Glyphicons Halflings';
  display: inline-block;
  padding: 10px;
  border-right: 1px solid #ddd;
}

.tabset-dropdown > .nav-tabs > li.active {
  display: block;
}

.tabset-dropdown > .nav-tabs > li > a,
.tabset-dropdown > .nav-tabs > li > a:focus,
.tabset-dropdown > .nav-tabs > li > a:hover {
  border: none;
  display: inline-block;
  border-radius: 4px;
  background-color: transparent;
}

.tabset-dropdown > .nav-tabs.nav-tabs-open > li {
  display: block;
  float: none;
}

.tabset-dropdown > .nav-tabs > li {
  display: none;
}
</style>

<!-- code folding -->
$if(code_menu)$
<style type="text/css">
.code-folding-btn { margin-bottom: 4px; }
</style>
$endif$


$if(toc_float)$

<style type="text/css">

#$idprefix$TOC {
  margin: 25px 0px 20px 0px;
}
@media (max-width: 768px) {
#$idprefix$TOC {
  position: relative;
  width: 100%;
}
}

@media print {
$if(toc_print)$
$else$
#$idprefix$TOC {
  display: none !important;
}
$endif$
.toc-content {
  /* see https://github.com/w3c/csswg-drafts/issues/4434 */
  float: right;
}
}

.toc-content {
  padding-left: 30px;
  padding-right: 40px;
}

div.main-container {
  max-width: 1200px;
}

div.tocify {
  width: 20%;
  max-width: 260px;
  max-height: 85%;
}

@media (min-width: 768px) and (max-width: 991px) {
  div.tocify {
    width: 25%;
  }
}

@media (max-width: 767px) {
  div.tocify {
    width: 100%;
    max-width: none;
  }
}

.tocify ul, .tocify li {
  line-height: 20px;
}

.tocify-subheader .tocify-item {
  font-size: 0.90em;
}

.tocify .list-group-item {
  border-radius: 0px;
}

$if(toc_collapsed)$
$else$
.tocify-subheader {
  display: inline;
}
.tocify-subheader .tocify-item {
  font-size: 0.95em;
}
$endif$

</style>

$endif$

$endif$

</head>

<body>

$if(theme)$

<div class="container-fluid main-container">

$if(toc_float)$

<!-- setup 3col/9col grid for toc_float and main content  -->
<div class="row">
$if(bs3)$
<div class="col-sm-12 col-md-4 col-lg-3">
$else$
<div class="col-xs-12 col-sm-4 col-md-3">
$endif$
$if(toc-title)$
<h2 id="$idprefix$toc-title">$toc-title$</h2>
$endif$
<div id="$idprefix$TOC" class="tocify">
</div>
</div>

$if(bs3)$
<div class="toc-content col-sm-12 col-md-8 col-lg-9">
$else$
<div class="toc-content col-xs-12 col-sm-8 col-md-9">
$endif$

$endif$

$endif$

$for(include-before)$
$include-before$
$endfor$

$if(theme)$
<div id="$idprefix$header">

$if(code_menu)$
<div class="btn-group pull-right float-right">
<button type="button" class="btn btn-default btn-xs btn-secondary btn-sm dropdown-toggle" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false"><span>Code</span> <span class="caret"></span></button>
<ul class="dropdown-menu dropdown-menu-right" style="min-width: 50px;">
$if(code_folding)$
<li><a id="rmd-show-all-code" href="#">Show All Code</a></li>
<li><a id="rmd-hide-all-code" href="#">Hide All Code</a></li>
$if(source_embed)$
<li role="separator" class="divider"></li>
$endif$
$endif$
$if(source_embed)$
<li><a id="rmd-download-source" href="#">Download Rmd</a></li>
$endif$
</ul>
</div>

$endif$

$endif$

$if(title)$
<h1 class="title toc-ignore">$title$</h1>
$if(subtitle)$
<h3 class="subtitle">$subtitle$</h3>
$endif$
$for(author)$
$if(author.name)$
<h4 class="author">$author.name$</h4>
$if(author.affiliation)$
<address class="author_afil">
$author.affiliation$<br>$endif$
$if(author.email)$
<a class="author_email" href="mailto:#">$author.email$</a>
</address>
$endif$
$else$
<h4 class="author">$author$</h4>
$endif$
$endfor$
$if(date)$
<h4 class="date">$date$</h4>
$endif$
$if(abstract)$
<div class="abstract">
<p class="abstract">Abstract</p>
$abstract$
</div>
$endif$
$endif$

$if(theme)$
</div>
$endif$

$if(toc_float)$
$else$
$if(toc)$
<div id="$idprefix$TOC">
$if(toc-title)$
<h2 id="$idprefix$toc-title">$toc-title$</h2>
$endif$
$toc$
</div>
$endif$
$endif$

$body$

$for(include-after)$
$include-after$
$endfor$

$if(theme)$

$if(toc_float)$
</div>
</div>
$endif$

</div>

<script>

// add bootstrap table styles to pandoc tables
function bootstrapStylePandocTables() {
  $$('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
}
$$(document).ready(function () {
  bootstrapStylePandocTables();
});

$if(kable-scroll)$
$$(document).ready(function () {
  $$('.knitsql-table').addClass('kable-table');
  var container = $$('.kable-table');
  container.each(function() {

    // move the caption out of the table
    var table = $$(this).children('table');
    var caption = table.children('caption').detach();
    caption.insertBefore($$(this)).css('display', 'inherit');
  });
});
$endif$

</script>

<!-- tabsets -->

<script>
$$(document).ready(function () {
  window.buildTabsets("$idprefix$TOC");
});

$$(document).ready(function () {
  $$('.tabset-dropdown > .nav-tabs > li').click(function () {
    $$(this).parent().toggleClass('nav-tabs-open');
  });
});
</script>
$endif$

<!-- code folding -->
$if(code_menu)$
<script>
$$(document).ready(function () {
$if(source_embed)$
  window.initializeSourceEmbed("$source_embed$");
$endif$
$if(code_folding)$
  window.initializeCodeFolding("$code_folding$" === "show");
$endif$
});
</script>
$endif$

$if(toc_float)$
<script>
$$(document).ready(function ()  {

    // move toc-ignore selectors from section div to header
    $$('div.section.toc-ignore')
        .removeClass('toc-ignore')
        .children('h1,h2,h3,h4,h5').addClass('toc-ignore');

    // establish options
    var options = {
      selectors: "$toc_selectors$",
      theme: "bootstrap3",
      context: '.toc-content',
      hashGenerator: function (text) {
        return text.replace(/[.\\/?&!#<>]/g, '').replace(/\s/g, '_');
      },
      ignoreSelector: ".toc-ignore",
      scrollTo: 0
    };
$if(toc_collapsed)$
    options.showAndHide = true;
$else$
    options.showAndHide = false;
$endif$
$if(toc_smooth_scroll)$
    options.smoothScroll = true;
$else$
    options.smoothScroll = false;
$endif$

    // tocify
    var toc = $$("#$idprefix$TOC").tocify(options).data("toc-tocify");
});
</script>
$endif$

$if(mathjax-url)$
<!-- dynamically load mathjax for compatibility with self-contained -->
<script>
  (function () {
    var script = document.createElement("script");
    script.type = "text/javascript";
    script.src  = "$mathjax-url$";
    document.getElementsByTagName("head")[0].appendChild(script);
  })();
</script>
$endif$

</body>
</html>