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Replace citation_year with deposition_date across the database. #53

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rtviii opened this issue May 23, 2024 · 0 comments
Open

Replace citation_year with deposition_date across the database. #53

rtviii opened this issue May 23, 2024 · 0 comments
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@rtviii
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rtviii commented May 23, 2024

Not all authors choose to include the citation in the deposition, hence we have about a 100 of sturctures floating around without a date and some are off.
Add to this:

entry_info_string = """
struct_keywords {
pdbx_keywords
text
}
rcsb_entry_info {
resolution_combined
}
rcsb_external_references {
link
type
id
}
exptl {
method
}
citation {
rcsb_authors
year
title
pdbx_database_id_DOI
}
struct_keywords {
pdbx_keywords
text
}
"""

The following gql query

rcsb_accession_info{
    has_released_experimental_data
    deposit_date
}

Propagate down the ETL pipeline. Add a "--metadata_only" flag to the ribd.py etl profile option s.t. you don't have to trigger polymer reclassification when this new date is added. Change filters in the database and frontend accordingly.

@rtviii rtviii self-assigned this May 23, 2024
@rtviii rtviii added the bug Something isn't working label May 23, 2024
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