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Assertion `_assay_props._platform == UNKNOWN_PLATFORM' failed #25

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TSL-RamKrishna opened this issue Nov 9, 2018 · 1 comment
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@TSL-RamKrishna
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Strawberry fails with following message:
virtual bool HitFactory::parse_header_line(const string&): Assertion `_assay_props._platform == UNKNOWN_PLATFORM' failed

While checking the code, I see it return SoLiD or Illumina and then asserts the return value is equal to UNKNOWN_PLATFORM. I do not get why it is checking if it is equal to UNKNOWN_PLATFORM.

I commented the line in the src/read.cpp file where it asserts _assay_props._platform == UNKNOWN_PLATFORM (line 357 in the file) and recompiled the software. It seems to work then.

@ruolin
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ruolin commented Nov 10, 2018

@TSL-RamKrishna Thank you very much for suggesting this fix! I will update the code to reflect your suggestions. Since it works for you now, I think I will put this fix into the next release. But let me know if you and any blockers, then I will update it soon. Again, thank you very much!

@ruolin ruolin closed this as completed May 3, 2019
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