Issues with install

[msettles]

Now getting

-- Install configuration: ""
-- Up-to-date: /share/biocore/software/lib/libhts_common.so
-- Up-to-date: /share/biocore/software/bin/super-deduper
-- Up-to-date: /share/biocore/software/bin/tab-converter
-- Up-to-date: /share/biocore/software/bin/polyATtrim
-- Up-to-date: /share/biocore/software/bin/q-window-trim
-- Up-to-date: /share/biocore/software/bin/cut-trim
-- Up-to-date: /share/biocore/software/bin/phix-remover
-- Up-to-date: /share/biocore/software/bin/overlapper
-- Up-to-date: /share/biocore/software/bin/n-remover
msettles@ganesh: build$phix-remover 0h
phix-remover: error while loading shared libraries: libhts_common.so: cannot open shared object file: No such file or directory
msettles@ganesh: build$phix-remover -h
phix-remover: error while loading shared libraries: libhts_common.so: cannot open shared object file: No such file or directory

[joe-angell]

You'll need to export LD_LIBRARY_PATH=/share/biocore/software/lib or add that dir to your ld.so.conf. I guess we should do a static link build just to avoid these issues and make it easier for people.

[msettles]

then that killed my LD reference to boost (has to be loaded by module first), so then
export LD_LIBRARY_PATH=/share/biocore/software/lib:$LD_LIBRARY_PATH
work, a bit cumbersome

Matt

[msettles]

and thanks for the quick response

[joe-angell]

fixed in #69