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This is the bug:
[1] "Read in and process NicheNet's networks"
[1] "Define expressed ligands and receptors in receiver and sender cells"
[1] "Perform DE analysis in receiver cell"
|++++++++++++++++++++++++++++++++++++++++++++++++++| 100% elapsed=03s
[1] "Perform NicheNet ligand activity analysis"
[1] "Infer active target genes of the prioritized ligands"
[1] "Infer receptors of the prioritized ligands"
Error in if (length(sender) > 1 | (length(sender) == 1 & sender != "undefined")) { :
the condition has length > 1
The text was updated successfully, but these errors were encountered:
nichenet_output = nichenet_seuratobj_aggregate(
seurat_obj = sce,
receiver = "neu_0",
condition_colname = "group", condition_oi = "Disease", condition_reference = "Healthy",
sender = c("B cell","Endothelial", "Epithelial","Fibroblasts","Macrophage","Mast cell","neu_1","neu_2","neu_3","Plasma cells","T cell/NK"),
ligand_target_matrix = ligand_target_matrix,
lr_network = lr_network,
weighted_networks = weighted_networks)
This is the bug:
[1] "Read in and process NicheNet's networks"
[1] "Define expressed ligands and receptors in receiver and sender cells"
[1] "Perform DE analysis in receiver cell"
|++++++++++++++++++++++++++++++++++++++++++++++++++| 100% elapsed=03s
[1] "Perform NicheNet ligand activity analysis"
[1] "Infer active target genes of the prioritized ligands"
[1] "Infer receptors of the prioritized ligands"
Error in if (length(sender) > 1 | (length(sender) == 1 & sender != "undefined")) { :
the condition has length > 1
The text was updated successfully, but these errors were encountered: