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use with R for Mac #42

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jamesreinecke opened this issue Jul 15, 2020 · 1 comment
Closed

use with R for Mac #42

jamesreinecke opened this issue Jul 15, 2020 · 1 comment

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@jamesreinecke
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Hello, thank you for making this awesome resource. Some people in my lab have started using it and it has yielded some interesting results. I am hoping to start using it too, however, I am a mac user. When i tried to install the Nichenetr package with the code provided i get the following message:

  • installing source package ‘nichenetr’ ...
    ** using staged installation
    ** R
    ** data
    *** moving datasets to lazyload DB
    ** inst
    ** byte-compile and prepare package for lazy loading
    sh: line 1: 47974 Killed: 9 R_TESTS= '/Library/Frameworks/R.framework/Resources/bin/R' --no-save --slave 2>&1 < '/var/folders/hv/19_cb9rx1rjgdvdzn4_lgddr0000gn/T//Rtmp1GRZaJ/filebb5f2e6f4fec'
    ERROR: lazy loading failed for package ‘nichenetr’
  • removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/nichenetr’
    Error: Failed to install 'nichenetr' from GitHub:
    (converted from warning) installation of package ‘/var/folders/hv/19_cb9rx1rjgdvdzn4_lgddr0000gn/T//RtmpbMArs0/fileba62197e2745/nichenetr_1.0.0.tar.gz’ had non-zero exit status

is this because nichenetr does not work with mac or might there be something else going on?

Thanks so much

@browaeysrobin
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Hi @jamesreinecke

I don't think it's a general Mac problem. I am no Mac user myself but asked a colleague to install nichenetr and she had no problems (OS Catalina V10.15.5 and R version 4.0.0 RC -- "Arbor Day").
So there is probably another issue, but I fear I don't know what...

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