## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] "COSMOS: 3 input/measured nodes are not in PKN any more: CD63, LRP10, DCBLD2 and 0 more."
## [1] "COSMOS: 85 input/measured nodes are not in PKN any more: AP1, AR, ASCL1, ATF5, BMAL1, CDX2 and 79 more."
## [1] "COSMOS: removing nodes that are not reachable from inputs within 6 steps"
## [1] "COSMOS: 30451 from 47438 interactions are removed from the PKN"
## [1] "COSMOS: 14 input/measured nodes are not in PKN any more: CEBPD, DNMT3B, ESRRA, HSF2, KLF10, KLF2 and 8 more."
## [1] "COSMOS: removing nodes that are not observable by measurements within 6 steps"
## [1] "COSMOS: 8714 from 16987 interactions are removed from the PKN"
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6