Error: Variables must be length 1 or 1166. Problem variables: 'text'

[davemcg]

Flat out isn't working. Even with the included HapMap data. Error is in the subject.

sessionInfo()
R version 3.3.1 (2016-06-21)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.11.6 (El Capitan)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats graphics grDevices utils datasets methods base

other attached packages:
[1] devtools_1.12.0 manhattanly_0.1.0 qqman_0.1.2 dplyr_0.5.0 purrr_0.2.2 readr_1.0.0 tidyr_0.6.0
[8] tibble_1.2 tidyverse_1.0.0 data.table_1.9.6

loaded via a namespace (and not attached):
[1] Rcpp_0.12.7 formatR_1.4 git2r_0.15.0 plyr_1.8.4 highr_0.6 base64enc_0.1-3 tools_3.3.1
[8] digest_0.6.10 jsonlite_1.1 memoise_1.0.0 evaluate_0.10 gtable_0.2.0 viridisLite_0.1.3 DBI_0.5-1
[15] curl_2.2 withr_1.0.2 httr_1.2.1 stringr_1.1.0 knitr_1.15 htmlwidgets_0.8 grid_3.3.1
[22] R6_2.2.0 plotly_4.5.6 magrittr_1.5 scales_0.4.1 htmltools_0.3.5 assertthat_0.1 colorspace_1.2-7
[29] stringi_1.1.2 lazyeval_0.2.0 munsell_0.4.3 chron_2.3-47

[sahirbhatnagar]

Thanks for reporting this. Can you try using the development version on github?

install.packages("devtools")
devtools::install_github("sahirbhatnagar/manhattanly")

[davemcg]

I am

[sahirbhatnagar]

Can you provide the code that produced that error?

[davemcg]

> manhattanly(HapMap)
Error: Variables must be length 1 or 1166.
Problem variables: 'text'

[sahirbhatnagar]

I've located the bug. Im working on it now. For the time being, you can get around this by specifying an annotation column:

manhattanly(HapMap, snp = "SNP")

[davemcg]

Great, thanks

[sahirbhatnagar]

Fixed #8