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this has been fixed on the main branch. However the notebook example no longer works (because all the files have been moved to s3). Here's an alternate example:
$ pysradb download -p SRP312633
I will close this now, feel free to reopen if there are any other issues.
Description
I am trying to run the example mentioned in the documentation, but it does not work. The first message I get is:
The supplied url column "None" cannot be found.
Then I list of urls is produced that looks like this:
run_accession study_accession experiment_accession recommended_url
SRR057533 SRP002605 SRX021977 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-3/SRR057533/SRR057533.2
...
and I am asked
Use recommended_url instead? [Y/n]:
I choose y and I end up getting the following type of errors:
Checking download URLs
Key error for: https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-3/SRR057533/SRR057533.2
...
What I did
pysradb download -p SRP002605
Using additionally the -y option gives the same error.
Desktop :
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