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GST.Core.doMLEGST.html
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<h1>GST.Core.doMLEGST<a class="headerlink" href="#gst-core-domlegst" title="Permalink to this headline">¶</a></h1>
<dl class="function">
<dt id="GST.Core.doMLEGST">
<code class="descclassname">GST.Core.</code><code class="descname">doMLEGST</code><span class="sig-paren">(</span><em>dataset</em>, <em>startGateset</em>, <em>gateStringsToUse</em>, <em>maxiter=100000</em>, <em>maxfev=None</em>, <em>tol=1e-06</em>, <em>opt_gates=True</em>, <em>opt_G0=True</em>, <em>opt_SPAM=True</em>, <em>opt_SP0=True</em>, <em>minProbClip=0.0001</em>, <em>probClipInterval=None</em>, <em>radius=0.0001</em>, <em>poissonPicture=True</em>, <em>verbosity=0</em>, <em>check=False</em>, <em>gateLabelAliases=None</em>, <em>memLimit=None</em><span class="sig-paren">)</span><a class="headerlink" href="#GST.Core.doMLEGST" title="Permalink to this definition">¶</a></dt>
<dd><p>Performs Maximum Likelihood Estimation Gate Set Tomography on the dataset.</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
<li><strong>dataset</strong> (<a class="reference internal" href="GST.DataSet.html#GST.DataSet" title="GST.DataSet"><em>DataSet</em></a>) – The data used to generate LMLEGST gate estimates</li>
<li><strong>startGateset</strong> (<a class="reference internal" href="GST.GateSet.html#GST.GateSet" title="GST.GateSet"><em>GateSet</em></a>) – The GateSet used as a starting point for the maximum-likelihood estimation.</li>
<li><strong>maxiter</strong> (<em>int, optional</em>) – Maximum number of iterations for the optimization.</li>
<li><strong>maxfev</strong> (<em>int, optional</em>) – Maximum number of function evaluations for the optimization.
Defaults to maxiter.</li>
<li><strong>tol</strong> (<em>float, optional</em>) – The tolerance for the least squares optimization.</li>
<li><strong>opt_gates</strong> (<em>bool, optional</em>) – Whether the gate matrices should be optimized</li>
<li><strong>opt_G0</strong> (<em>bool, optional</em>) – Whether the first row of gate matrices should be optimized. If False, then
when the startGateset has TP gates this will now be changed during the
optimization and the resulting gates are guaranteed to be TP.</li>
<li><strong>opt_SPAM</strong> (<em>bool, optional</em>) – Whether the rhoVecs and EVecs should be optimized</li>
<li><strong>opt_SP0</strong> (<em>bool, optional</em>) – Whether the first element of the state preparation vectors
(i.e. the rhoVecs) should be optimized. If False, then rhoVecs
in startingGateset that are trace == 1 will remain trace == 1
after the optimization.</li>
<li><strong>minProbClip</strong> (<em>float, optional</em>) – The minimum probability treated normally in the evaluation of the log-likelihood.
A penalty function replaces the true log-likelihood for probabilities that lie
below this threshold so that the log-likelihood never becomes undefined (which improves
optimizer performance).</li>
<li><strong>probClipInterval</strong> (<em>2-tuple or None, optional</em>) – (min,max) values used to clip the probabilities predicted by gatesets during MLEGST’s
search for an optimal gateset (if not None). Defaults to no clipping.</li>
<li><strong>radius</strong> (<em>float, optional</em>) – Specifies the severity of rounding used to “patch” the zero-frequency
terms of the log-likelihood.</li>
<li><strong>poissonPicture</strong> (<em>boolean, optional</em>) – Whether the Poisson-picture log-likelihood should be used.</li>
<li><strong>check</strong> (<em>boolean, optional</em>) – If True, perform extra checks within code to verify correctness. Used
for testing, and runs much slower when True.</li>
<li><strong>gateLabelAliases</strong> (<em>dictionary, optional</em>) – Dictionary whose keys are gate label “aliases” and whose values are tuples
corresponding to what that gate label should be expanded into before querying
the dataset. Defaults to the empty dictionary (no aliases defined)
e.g. gateLabelAliases[‘Gx^3’] = (‘Gx’,’Gx’,’Gx’)</li>
<li><strong>memLimit</strong> (<em>int, optional</em>) – A rough memory limit in bytes which restricts the amount of intermediate
values that are computed and stored.</li>
</ul>
</td>
</tr>
<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last"><ul class="simple">
<li><strong>maxLogL</strong> (<em>float</em>) –
The maximum log-likelihood obtained.</li>
<li><strong>gateset</strong> (<em>GateSet</em>) –
The gate set that maximized the log-likelihood.</li>
</ul>
</p>
</td>
</tr>
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