Merge pull request #244 from ssjunnebo/627258_codecov

627258 codecov

.travis.yml

@@ -19,6 +19,11 @@ python:
 sudo: false
 install:
   - "source ./install_dependencies.sh"
-  - "autoreconf -i"
-  - "./configure"
-script: "make check"
+before_script:
+- pip install codecov
+script:
+  - autoreconf -i && ./configure --enable-maintainer-mode CFLAGS='-O0 --coverage' && make && make check
+  - cd python && coverage run setup.py test
+after_success:
+  - bash <(curl -s https://codecov.io/bash)
+  - codecov

README.md

@@ -8,6 +8,8 @@ Genealogies Unbiased By recomBinations In Nucleotide Sequences
 [![Container ready](https://img.shields.io/badge/container-ready-brightgreen.svg)](https://quay.io/repository/biocontainers/gubbins)  
 [![Docker Build Status](https://img.shields.io/docker/build/sangerpathogens/gubbins.svg)](https://hub.docker.com/r/sangerpathogens/gubbins)  
 [![Docker Pulls](https://img.shields.io/docker/pulls/sangerpathogens/gubbins.svg)](https://hub.docker.com/r/sangerpathogens/gubbins)  
+[![codecov](https://codecov.io/gh/sanger-pathogens/gubbins/branch/master/graph/badge.svg)](https://codecov.io/gh/sanger-pathogens/gubbins)
+
 
 ## Contents
   * [Introduction](#introduction)