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GPL-502 use sample type column to determine plate purpose #56

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2 tasks
pjvv opened this issue May 27, 2020 · 0 comments · Fixed by #67, #76 or #77
Closed
2 tasks

GPL-502 use sample type column to determine plate purpose #56

pjvv opened this issue May 27, 2020 · 0 comments · Fixed by #67, #76 or #77
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enhancement New feature or request Heron Extraction

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@pjvv
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pjvv commented May 27, 2020

User story
When tube racks or plates are scanned into asset audits I want the wrangler to look at the sample_type column in cgap_heron table and use it to specify the plate purpose to SequenceScape.

Who the primary contacts are for this story
Laura

Acceptance criteria
To be considered successful the solution must allow:

  • If sample type is extract create a TR stock 96 (if tube rack) or a LHR stock plate (if plate).
  • If sample type is lysate or primary create a Heron Lysed Tube Rack (if tube rack) or Heron Lysed plate (if plate).

Additional context

  1. x501 on CGAP backlog (in progress) will add a new sample_state column which will be the current state of the sample (lysate or extract). If x501 has been released then instead of using sample_type column as described above, use sample_state column. Sample_state on release from cgap will either be extract or lysate.
  2. Laura investigating if TR stock 96 and Stock plate are the most appropriate plate purposes to use for extracts - spoke to Danni and James (29/05/20) - we would prefer TR stock 96 and LHR stock plate - I've edited the acceptance criteria above.
@pjvv pjvv added the enhancement New feature or request label May 27, 2020
@rl15 rl15 changed the title GPL-nnn use sample type column to determine plate purpose GPL-502 use sample type column to determine plate purpose May 28, 2020
@KatyTaylor KatyTaylor self-assigned this Jun 1, 2020
@KatyTaylor KatyTaylor linked a pull request Jun 4, 2020 that will close this issue
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