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Azimuth installation problem #221

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bebejhun opened this issue Apr 9, 2024 · 2 comments
Closed

Azimuth installation problem #221

bebejhun opened this issue Apr 9, 2024 · 2 comments

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@bebejhun
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bebejhun commented Apr 9, 2024

I am encountering this error when I try to download the Azimuth.

Warning: downloaded length 21789259 != reported length 731245539Warning: URL 'https://mghp.osn.xsede.org/bir190004-bucket01/archive.bioconductor.org/packages/3.16/data/annotation/src/contrib/BSgenome.Hsapiens.UCSC.hg38_1.4.5.tar.gz': Timeout of 60 seconds was reachedError in download.file(url, destfile, method, mode = "wb", ...) :
download from 'https://bioconductor.org/packages/3.16/data/annotation/src/contrib/BSgenome.Hsapiens.UCSC.hg38_1.4.5.tar.gz' failed
Warning: download of package 'BSgenome.Hsapiens.UCSC.hg38' failed── R CMD build

Then, I tried to install first the BSgenome however I also get an error for this.

BiocManager::install("BSgenome.Hsapiens.UCSC.hg38")

Warning: downloaded length 74545739 != reported length 731245539Warning: URL 'https://mghp.osn.xsede.org/bir190004-bucket01/archive.bioconductor.org/packages/3.16/data/annotation/src/contrib/BSgenome.Hsapiens.UCSC.hg38_1.4.5.tar.gz': Timeout of 300 seconds was reachedError in download.file(url, destfile, method, mode = "wb", ...) :
download from 'https://bioconductor.org/packages/3.16/data/annotation/src/contrib/BSgenome.Hsapiens.UCSC.hg38_1.4.5.tar.gz' failed
Warning: download of package 'BSgenome.Hsapiens.UCSC.hg38' failed

Does anyone here know how to solve this problem?
Thanks in advance.

@Gesmira
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Gesmira commented Apr 29, 2024

Hi @bebejhun.
Have you tried the solution here?

@bebejhun bebejhun reopened this Apr 30, 2024
@bebejhun
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@Gesmira yep I already solved it. Thanks !

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