fatal error: hdf5.h: No such file or directory

[bromrector]

// #include "hdf5.h"

Any ideas?

[ghost]

@bromrector found a fix? Still getting the error when building in a docker image even after installing libhdf5-dev libhdf5-serial-dev(debian).

[sbinet]

could you share that Dockerfile? (possibly filing a new issue)

[ghost]

FROM golang:1.7.3

RUN go get github.com/tools/godep && apt-get update -y && apt-get install -y libhdf5-dev libhdf5-serial-dev

RUN mkdir -p $GOPATH/src/github.com/org/hdf/
WORKDIR $GOPATH/src/github.com/org/hdf/

COPY ./Godeps Godeps
COPY ./vendor vendor

RUN /go/bin/godep restore

COPY ./ ./

RUN go get -v ./...

Looks like this could be a debian 8 related issue?

[ghost]

Worked after adding:

ENV CGO_CFLAGS="-I/usr/lib/x86_64-linux-gnu/hdf5/serial/include"
ENV LIBRARY_PATH /usr/lib/x86_64-linux-gnu/hdf5/serial/