L3 709- Compartments don't have spatial dimension!

[luciansmith]

Hello,

I've run into another problem with the L3 models and the sbml test suite. There are a couple of models, like 709, 710 ... that I can pass for L2V4 but not for L3 ... when I was debugging it it would seem that no spatial dimension is specified on the compartment

In L2V4: <compartment id="C" name="C" size="0.5" units="volume"/>
means spatialDimensions = 3

in L3V1: <compartment id="C" name="C" size="0.5" units="volume" constant="true"/>
means spatialDimensions = not defined!

In any case ... that changes this result for me! ... I believe there is a whole round of those models around ... (or at least I hope so otherwise something else is wrong)

Cheers
Frank

Reported by: fbergmann

[luciansmith]

This is indeed a bug. A translation from l2 should set spatialDimensions to 3 if there are not declared on the l2 model - since this is the default value.

The models are now fixed in svn.

Original comment by: sarahkeating

[luciansmith]

thanks that solved the issue ... now we pass the same number of tests for L3V1 as for L2V4 ...

Cheers
Frank

Original comment by: fbergmann

[luciansmith]

• status: open --> closed

Original comment by: fbergmann