v0.14.20

webknossos

Changed

• Updated ruff to v0.4.0 1047
• Added NIfTI suffix .nii to list of supported bioformats suffixes. #1048

cluster_tools

Changed

• Array jobs are spawned faster now, because common meta data is not serialized for each subjob. The performance improvement is especially big, when custom logging code is configured for array jobs. #1042
• Updated ruff to v0.4.0 1047

v0.14.19

webknossos

Changed

• Removed special CLI command for cubing Nifti files. Use regular conversion command instead. Further, moved Python dependencies for examples and dev dependcies into optional groups which are not installed by default. Install with poetry install --with dev --with examples. #1024

cluster_tools

Changed

• Moved the dependencies for Kubernetes and Dask support into optional extras that need to be installed separately. Either with poetry install --all-extras or pip install -e "all". #1024

v0.14.18

webknossos

Fixed

• Fixed a bug, where using an unaligned topleft value for add_layer_from_images leads to corrupted data. #1036

v0.14.17

webknossos

Changed

• The characters @ and $ are allowed within layer names now. #1034

v0.14.16

webknossos

Added

• Add CLI tool for offline merging of zip annotations with fallback datasets. #996
• Added support for converting new file formats such as DICOM, using the bioformats reader. #1014

Changed

• The rules for naming the layers have been tightened to match the allowed layer names on webknossos. #1016
• Replaced PyLint linter + black formatter with Ruff for development. #1013
• The remote operations now use the WEBKNOSSOS API version 6. #1018
• The conversion of 4D Tiff files to a Zarr3 Dataset is possible. NDBoundingBoxes and VecInt classes are introduced to support working with more than 3 dimensions. #966

cluster_tools

Changed

• Replaced black+isort formatters and pylint linter with ruff. #1023

v0.14.15

cluster_tools

Fixed

• Fixed working directory propagation in DaskExecutor. #994

v0.14.14

webknossos

Added

• Added a method to the Datasets class that calculates a dataset's bounding box covering all layers. #975

v0.14.13

webknossos

Fixed

• Fixed a bug in reading project info from webknossos using the api client for non-admins. #972

v0.14.12

webknossos

Fixed

• Fixes that the buffered slice writer could overwrite data when writing less slices than buffer_size at an offset that is not aligned. #973

v0.14.11

Release for v0.14.11