No module named 'pymol.cmd'

[biotech70]

Hi during the execution of Pymol I get the following error:

_Traceback (most recent call last):
File "/home/proteininstitute/miniconda3/lib/python3.8/site-packages/pymol/init.py", line 72, in
import pymol
File "/home/proteininstitute/miniconda3/lib/python3.8/site-packages/pymol/init.py", line 558, in
import pymol._cmd
ModuleNotFoundError: No module named 'pymol.cmd'

[JarrettSJohnson]

Was this self built? The pymol open-source conda forge package?

[biotech70]

No, I used your source code. I download it from Github and install it in ubuntu 20.04, but my bashrc file was deleted and after that, I get this error for Pymol execution.

[biotech70]

Of course, I tried again to install the Pymol using your source code, which shows this error, but the following error was displayed.

[smiles724]

I met a similar issue, which reports it cannot find pymol_cmd.

Is there anyone who can provide any solution to tackle it? I would really appreciate it!

[speleo3]

@smiles724 try something like sudo apt install libgl1

Other packages which provide libGL.so.1: https://packages.ubuntu.com/search?suite=focal&arch=amd64&mode=exactfilename&searchon=contents&keywords=libGL.so.1

[smiles724]

Great thanks, it works!!!

[JarrettSJohnson]

Going to close. The issue from smiles724 is different than the original post and has been resolved. The image from biotech70 suggests that the python included in the environment does not match the platform config of what it's being ran on.