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chapter2.ipynb
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chapter2.ipynb
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{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"\n",
"# Chapter 2\n",
"Back to [Chapter 1](chapter1.ipynb)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"In the second chapter we tested a real ion channel model using data from the [OpenWorm](http://openworm.org) project. Here we'll test a reduced neuron model using data from the [NeuroElectro](http://neuroelectro.org) project and from the [Allen Brain Institute Cell Types](http://celltypes.brain-map.org) database. \n",
"### We'll test an Izhikevich model against data from a Layer V pyramidal cell in primary visual cortex"
]
},
{
"cell_type": "code",
"execution_count": 1,
"metadata": {},
"outputs": [],
"source": [
"%matplotlib inline\n",
"import os, sys\n",
"import numpy as np\n",
"import matplotlib.pyplot as plt\n",
"import matplotlib as mpl\n",
"mpl.rcParams['font.size'] = 18\n",
"import quantities as pq\n",
"import sciunit\n",
"import neuronunit\n",
"from neuronunit import aibs\n",
"from neuronunit.models.reduced import ReducedModel"
]
},
{
"cell_type": "code",
"execution_count": 2,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"Getting Rheobase cached data value for from AIBS dataset 354190013\n",
"Getting Input Resistance data values from neuroelectro.org\n",
"http://neuroelectro.org/api/1/nes/?nlex=nifext_50&e__name=Input+Resistance\n",
"Getting Membrane Time Constant data values from neuroelectro.org\n",
"http://neuroelectro.org/api/1/nes/?nlex=nifext_50&e__name=Membrane+Time+Constant\n",
"Getting Cell Capacitance data values from neuroelectro.org\n",
"http://neuroelectro.org/api/1/nes/?nlex=nifext_50&e__name=Cell+Capacitance\n",
"Getting Resting membrane potential data values from neuroelectro.org\n",
"http://neuroelectro.org/api/1/nes/?nlex=nifext_50&e__name=Resting+membrane+potential\n",
"Getting Spike Half-Width data values from neuroelectro.org\n",
"http://neuroelectro.org/api/1/nes/?nlex=nifext_50&e__name=Spike+Half-Width\n",
"Getting Spike Amplitude data values from neuroelectro.org\n",
"http://neuroelectro.org/api/1/nes/?nlex=nifext_50&e__name=Spike+Amplitude\n",
"Getting Spike Threshold data values from neuroelectro.org\n",
"http://neuroelectro.org/api/1/nes/?nlex=nifext_50&e__name=Spike+Threshold\n"
]
}
],
"source": [
"import quantities as pq\n",
"from neuronunit import tests as nu_tests, neuroelectro\n",
"neuron = {'nlex_id': 'nifext_50'} # Layer V pyramidal cell\n",
"tests = []\n",
"\n",
"dataset_id = 354190013 # Internal ID that AIBS uses for a particular Scnn1a-Tg2-Cre \n",
" # Primary visual area, layer 5 neuron.\n",
" \n",
"# Obtain the empirical rheobase current from the Allen Brain Insitute Cell Types database. \n",
"observation = aibs.get_observation(dataset_id, 'rheobase')\n",
"rheobase_test = nu_tests.RheobaseTest(observation=observation)\n",
"tests += [rheobase_test]\n",
" \n",
"test_class_params = [(nu_tests.InputResistanceTest, {}),\n",
" (nu_tests.TimeConstantTest, {}),\n",
" (nu_tests.CapacitanceTest, {}),\n",
" (nu_tests.RestingPotentialTest, {}),\n",
" (nu_tests.InjectedCurrentAPWidthTest, {}),\n",
" (nu_tests.InjectedCurrentAPAmplitudeTest, {}),\n",
" (nu_tests.InjectedCurrentAPThresholdTest, {})\n",
" ]\n",
"\n",
"# Obtain all other parameters from neuroelectro.org.\n",
"for cls, params in test_class_params:\n",
" observation = cls.neuroelectro_summary_observation(neuron)\n",
" tests += [cls(observation, **params)]\n",
" \n",
"# A hook to update all tests after the RheobaseTest to use the rheobase current (to produce exactly one AP)\n",
"def update_amplitude(test,tests,score):\n",
" rheobase = score.prediction['value']\n",
" for test in tests[1:]:\n",
" if 'Injected' in test.name:\n",
" # Set current injection to just suprathreshold\n",
" test.params['injected_square_current']['amplitude'] = rheobase*1.01 \n",
" \n",
"hooks = {tests[0]: {'f': update_amplitude}}\n",
"suite = sciunit.TestSuite(tests,name=\"vm_suite\", hooks=hooks)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### The Izhikevich model here is defined in an NeuroML2/LEMS file. \n",
"### We will run it using the jNeuroML backend for simplicity, although this is *much* slower than the native NEURON backend. "
]
},
{
"cell_type": "code",
"execution_count": 3,
"metadata": {},
"outputs": [],
"source": [
"# This example is from https://github.com/OpenSourceBrain/IzhikevichModel.\n",
"from pathlib import Path\n",
"LEMS_MODEL_PATH = Path(neuronunit.__path__[0]).parent / 'docs' / 'data' / 'NeuroML2' / 'LEMS_2007One.xml'\n",
"model = ReducedModel(LEMS_MODEL_PATH, name='Vanilla_Model', backend='jNeuroML')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Run a series of tests. The RheobaseTest is run first to obtain the rheobase current to use in all the other tests."
]
},
{
"cell_type": "code",
"execution_count": 4,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"\u001b[38;2;197;231;126m\u001b[48;2;50;50;50mScore: Ratio = 0.41 for Vanilla_Model on RheobaseTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;229;244;155m\u001b[48;2;50;50;50mScore: Z = -0.53 for Vanilla_Model on InputResistanceTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;255;238;162m\u001b[48;2;50;50;50mScore: Z = -0.81 for Vanilla_Model on TimeConstantTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;137;205;103m\u001b[48;2;50;50;50mScore: Z = -0.19 for Vanilla_Model on CapacitanceTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;253;170;95m\u001b[48;2;50;50;50mScore: Z = 1.26 for Vanilla_Model on RestingPotentialTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;246;251;178m\u001b[48;2;50;50;50mScore: Z = -0.62 for Vanilla_Model on InjectedCurrentAPWidthTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;245;114;69m\u001b[48;2;50;50;50mScore: Z = -1.72 for Vanilla_Model on InjectedCurrentAPAmplitudeTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;233;85;56m\u001b[48;2;50;50;50mScore: Z = 2.39 for Vanilla_Model on InjectedCurrentAPThresholdTest\u001b[49m\u001b[39m\n"
]
}
],
"source": [
"score_matrix = suite.judge(model)"
]
},
{
"cell_type": "code",
"execution_count": 5,
"metadata": {},
"outputs": [
{
"data": {
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" }</style><table id=\"T_efda27c8_acd3_11eb_b4b3_ac1f6b647d9a\" ><thead> <tr> <th class=\"blank level0\" ></th> <th class=\"col_heading level0 col0\" >Vanilla_Model</th> </tr></thead><tbody>\n",
" <tr>\n",
" <th id=\"T_efda27c8_acd3_11eb_b4b3_ac1f6b647d9alevel0_row0\" class=\"row_heading level0 row0\" >Mean</th>\n",
" <td id=\"T_efda27c8_acd3_11eb_b4b3_ac1f6b647d9arow0_col0\" class=\"data row0 col0\" >0.426</td>\n",
" </tr>\n",
" <tr>\n",
" <th id=\"T_efda27c8_acd3_11eb_b4b3_ac1f6b647d9alevel0_row1\" class=\"row_heading level0 row1\" >RheobaseTest</th>\n",
" <td id=\"T_efda27c8_acd3_11eb_b4b3_ac1f6b647d9arow1_col0\" class=\"data row1 col0\" >Ratio = 0.41</td>\n",
" </tr>\n",
" <tr>\n",
" <th id=\"T_efda27c8_acd3_11eb_b4b3_ac1f6b647d9alevel0_row2\" class=\"row_heading level0 row2\" >InputResistanceTest</th>\n",
" <td id=\"T_efda27c8_acd3_11eb_b4b3_ac1f6b647d9arow2_col0\" class=\"data row2 col0\" >Z = -0.53</td>\n",
" </tr>\n",
" <tr>\n",
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" <td id=\"T_efda27c8_acd3_11eb_b4b3_ac1f6b647d9arow3_col0\" class=\"data row3 col0\" >Z = -0.81</td>\n",
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" <tr>\n",
" <th id=\"T_efda27c8_acd3_11eb_b4b3_ac1f6b647d9alevel0_row4\" class=\"row_heading level0 row4\" >CapacitanceTest</th>\n",
" <td id=\"T_efda27c8_acd3_11eb_b4b3_ac1f6b647d9arow4_col0\" class=\"data row4 col0\" >Z = -0.19</td>\n",
" </tr>\n",
" <tr>\n",
" <th id=\"T_efda27c8_acd3_11eb_b4b3_ac1f6b647d9alevel0_row5\" class=\"row_heading level0 row5\" >RestingPotentialTest</th>\n",
" <td id=\"T_efda27c8_acd3_11eb_b4b3_ac1f6b647d9arow5_col0\" class=\"data row5 col0\" >Z = 1.26</td>\n",
" </tr>\n",
" <tr>\n",
" <th id=\"T_efda27c8_acd3_11eb_b4b3_ac1f6b647d9alevel0_row6\" class=\"row_heading level0 row6\" >InjectedCurrentAPWidthTest</th>\n",
" <td id=\"T_efda27c8_acd3_11eb_b4b3_ac1f6b647d9arow6_col0\" class=\"data row6 col0\" >Z = -0.62</td>\n",
" </tr>\n",
" <tr>\n",
" <th id=\"T_efda27c8_acd3_11eb_b4b3_ac1f6b647d9alevel0_row7\" class=\"row_heading level0 row7\" >InjectedCurrentAPAmplitudeTest</th>\n",
" <td id=\"T_efda27c8_acd3_11eb_b4b3_ac1f6b647d9arow7_col0\" class=\"data row7 col0\" >Z = -1.72</td>\n",
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" <tr>\n",
" <th id=\"T_efda27c8_acd3_11eb_b4b3_ac1f6b647d9alevel0_row8\" class=\"row_heading level0 row8\" >InjectedCurrentAPThresholdTest</th>\n",
" <td id=\"T_efda27c8_acd3_11eb_b4b3_ac1f6b647d9arow8_col0\" class=\"data row8 col0\" >Z = 2.39</td>\n",
" </tr>\n",
" </tbody></table>"
],
"text/plain": [
" Vanilla_Model\n",
"Mean 0.426\n",
"RheobaseTest Ratio = 0.41\n",
"InputResistanceTest Z = -0.53\n",
"TimeConstantTest Z = -0.81\n",
"CapacitanceTest Z = -0.19\n",
"RestingPotentialTest Z = 1.26\n",
"InjectedCurrentAPWidthTest Z = -0.62\n",
"InjectedCurrentAPAmplitudeTest Z = -1.72\n",
"InjectedCurrentAPThresholdTest Z = 2.39"
]
},
"execution_count": 5,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"score_matrix.add_mean().T"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Now we can sweep across a parameter (the resting potential) and run the same test suite on a model corresponding to each value of this parameter."
]
},
{
"cell_type": "code",
"execution_count": 6,
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"[V_rest=-80mV (ReducedModel),\n",
" V_rest=-70mV (ReducedModel),\n",
" V_rest=-60mV (ReducedModel),\n",
" V_rest=-50mV (ReducedModel)]"
]
},
"execution_count": 6,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"models = []\n",
"for vr in np.linspace(-80, -50, 4):\n",
" model = ReducedModel(LEMS_MODEL_PATH, \n",
" name='V_rest=%dmV' % vr, \n",
" attrs={'//izhikevich2007Cell':\n",
" {'vr':'%d mV' % vr}\n",
" })\n",
" models.append(model)\n",
"models"
]
},
{
"cell_type": "code",
"execution_count": 7,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"\u001b[38;2;165;217;106m\u001b[48;2;50;50;50mScore: Ratio = 1.87 for V_rest=-80mV on RheobaseTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;254;203;121m\u001b[48;2;50;50;50mScore: Z = -1.04 for V_rest=-80mV on InputResistanceTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;248;137;80m\u001b[48;2;50;50;50mScore: Z = -1.50 for V_rest=-80mV on TimeConstantTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;147;209;104m\u001b[48;2;50;50;50mScore: Z = -0.22 for V_rest=-80mV on CapacitanceTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;243;107;66m\u001b[48;2;50;50;50mScore: Z = -1.80 for V_rest=-80mV on RestingPotentialTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;255;239;164m\u001b[48;2;50;50;50mScore: Z = -0.80 for V_rest=-80mV on InjectedCurrentAPWidthTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;254;175;98m\u001b[48;2;50;50;50mScore: Z = -1.22 for V_rest=-80mV on InjectedCurrentAPAmplitudeTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;247;124;74m\u001b[48;2;50;50;50mScore: Z = 1.59 for V_rest=-80mV on InjectedCurrentAPThresholdTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;63;170;89m\u001b[48;2;50;50;50mScore: Ratio = 1.01 for V_rest=-70mV on RheobaseTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;255;230;149m\u001b[48;2;50;50;50mScore: Z = -0.87 for V_rest=-70mV on InputResistanceTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;253;168;94m\u001b[48;2;50;50;50mScore: Z = -1.27 for V_rest=-70mV on TimeConstantTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;145;208;104m\u001b[48;2;50;50;50mScore: Z = -0.22 for V_rest=-70mV on CapacitanceTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;165;217;106m\u001b[48;2;50;50;50mScore: Z = -0.27 for V_rest=-70mV on RestingPotentialTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;255;251;184m\u001b[48;2;50;50;50mScore: Z = -0.71 for V_rest=-70mV on InjectedCurrentAPWidthTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;249;142;82m\u001b[48;2;50;50;50mScore: Z = -1.46 for V_rest=-70mV on InjectedCurrentAPAmplitudeTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;239;97;61m\u001b[48;2;50;50;50mScore: Z = 1.96 for V_rest=-70mV on InjectedCurrentAPThresholdTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;197;231;126m\u001b[48;2;50;50;50mScore: Ratio = 0.41 for V_rest=-60mV on RheobaseTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;229;244;155m\u001b[48;2;50;50;50mScore: Z = -0.53 for V_rest=-60mV on InputResistanceTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;255;238;162m\u001b[48;2;50;50;50mScore: Z = -0.81 for V_rest=-60mV on TimeConstantTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;137;205;103m\u001b[48;2;50;50;50mScore: Z = -0.19 for V_rest=-60mV on CapacitanceTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;253;170;95m\u001b[48;2;50;50;50mScore: Z = 1.26 for V_rest=-60mV on RestingPotentialTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;246;251;178m\u001b[48;2;50;50;50mScore: Z = -0.62 for V_rest=-60mV on InjectedCurrentAPWidthTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;245;114;69m\u001b[48;2;50;50;50mScore: Z = -1.72 for V_rest=-60mV on InjectedCurrentAPAmplitudeTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;233;85;56m\u001b[48;2;50;50;50mScore: Z = 2.39 for V_rest=-60mV on InjectedCurrentAPThresholdTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;254;191;111m\u001b[48;2;50;50;50mScore: Ratio = 0.08 for V_rest=-50mV on RheobaseTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;169;219;108m\u001b[48;2;50;50;50mScore: Z = 0.29 for V_rest=-50mV on InputResistanceTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;201;233;129m\u001b[48;2;50;50;50mScore: Z = 0.40 for V_rest=-50mV on TimeConstantTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;120;197;101m\u001b[48;2;50;50;50mScore: Z = -0.14 for V_rest=-50mV on CapacitanceTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;230;78;52m\u001b[48;2;50;50;50mScore: Z = 2.79 for V_rest=-50mV on RestingPotentialTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;228;244;153m\u001b[48;2;50;50;50mScore: Z = -0.52 for V_rest=-50mV on InjectedCurrentAPWidthTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;239;97;61m\u001b[48;2;50;50;50mScore: Z = -2.01 for V_rest=-50mV on InjectedCurrentAPAmplitudeTest\u001b[49m\u001b[39m\n",
"\u001b[38;2;230;78;52m\u001b[48;2;50;50;50mScore: Z = 2.85 for V_rest=-50mV on InjectedCurrentAPThresholdTest\u001b[49m\u001b[39m\n"
]
}
],
"source": [
"score_matrix = suite.judge(models)"
]
},
{
"cell_type": "code",
"execution_count": 8,
"metadata": {},
"outputs": [
{
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" }</style><table id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9a\" ><thead> <tr> <th class=\"blank level0\" ></th> <th class=\"col_heading level0 col0\" >V_rest=-80mV</th> <th class=\"col_heading level0 col1\" >V_rest=-70mV</th> <th class=\"col_heading level0 col2\" >V_rest=-60mV</th> <th class=\"col_heading level0 col3\" >V_rest=-50mV</th> </tr></thead><tbody>\n",
" <tr>\n",
" <th id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9alevel0_row0\" class=\"row_heading level0 row0\" >RheobaseTest</th>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow0_col0\" class=\"data row0 col0\" >Ratio = 1.87</td>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow0_col1\" class=\"data row0 col1\" >Ratio = 1.01</td>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow0_col2\" class=\"data row0 col2\" >Ratio = 0.41</td>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow0_col3\" class=\"data row0 col3\" >Ratio = 0.08</td>\n",
" </tr>\n",
" <tr>\n",
" <th id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9alevel0_row1\" class=\"row_heading level0 row1\" >InputResistanceTest</th>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow1_col0\" class=\"data row1 col0\" >Z = -1.04</td>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow1_col1\" class=\"data row1 col1\" >Z = -0.87</td>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow1_col2\" class=\"data row1 col2\" >Z = -0.53</td>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow1_col3\" class=\"data row1 col3\" >Z = 0.29</td>\n",
" </tr>\n",
" <tr>\n",
" <th id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9alevel0_row2\" class=\"row_heading level0 row2\" >TimeConstantTest</th>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow2_col0\" class=\"data row2 col0\" >Z = -1.50</td>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow2_col1\" class=\"data row2 col1\" >Z = -1.27</td>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow2_col2\" class=\"data row2 col2\" >Z = -0.81</td>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow2_col3\" class=\"data row2 col3\" >Z = 0.40</td>\n",
" </tr>\n",
" <tr>\n",
" <th id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9alevel0_row3\" class=\"row_heading level0 row3\" >CapacitanceTest</th>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow3_col0\" class=\"data row3 col0\" >Z = -0.22</td>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow3_col1\" class=\"data row3 col1\" >Z = -0.22</td>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow3_col2\" class=\"data row3 col2\" >Z = -0.19</td>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow3_col3\" class=\"data row3 col3\" >Z = -0.14</td>\n",
" </tr>\n",
" <tr>\n",
" <th id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9alevel0_row4\" class=\"row_heading level0 row4\" >RestingPotentialTest</th>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow4_col0\" class=\"data row4 col0\" >Z = -1.80</td>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow4_col1\" class=\"data row4 col1\" >Z = -0.27</td>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow4_col2\" class=\"data row4 col2\" >Z = 1.26</td>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow4_col3\" class=\"data row4 col3\" >Z = 2.79</td>\n",
" </tr>\n",
" <tr>\n",
" <th id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9alevel0_row5\" class=\"row_heading level0 row5\" >InjectedCurrentAPWidthTest</th>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow5_col0\" class=\"data row5 col0\" >Z = -0.80</td>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow5_col1\" class=\"data row5 col1\" >Z = -0.71</td>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow5_col2\" class=\"data row5 col2\" >Z = -0.62</td>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow5_col3\" class=\"data row5 col3\" >Z = -0.52</td>\n",
" </tr>\n",
" <tr>\n",
" <th id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9alevel0_row6\" class=\"row_heading level0 row6\" >InjectedCurrentAPAmplitudeTest</th>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow6_col0\" class=\"data row6 col0\" >Z = -1.22</td>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow6_col1\" class=\"data row6 col1\" >Z = -1.46</td>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow6_col2\" class=\"data row6 col2\" >Z = -1.72</td>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow6_col3\" class=\"data row6 col3\" >Z = -2.01</td>\n",
" </tr>\n",
" <tr>\n",
" <th id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9alevel0_row7\" class=\"row_heading level0 row7\" >InjectedCurrentAPThresholdTest</th>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow7_col0\" class=\"data row7 col0\" >Z = 1.59</td>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow7_col1\" class=\"data row7 col1\" >Z = 1.96</td>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow7_col2\" class=\"data row7 col2\" >Z = 2.39</td>\n",
" <td id=\"T_67999910_acd4_11eb_b4b3_ac1f6b647d9arow7_col3\" class=\"data row7 col3\" >Z = 2.85</td>\n",
" </tr>\n",
" </tbody></table>"
],
"text/plain": [
" V_rest=-80mV V_rest=-70mV V_rest=-60mV \\\n",
"RheobaseTest Ratio = 1.87 Ratio = 1.01 Ratio = 0.41 \n",
"InputResistanceTest Z = -1.04 Z = -0.87 Z = -0.53 \n",
"TimeConstantTest Z = -1.50 Z = -1.27 Z = -0.81 \n",
"CapacitanceTest Z = -0.22 Z = -0.22 Z = -0.19 \n",
"RestingPotentialTest Z = -1.80 Z = -0.27 Z = 1.26 \n",
"InjectedCurrentAPWidthTest Z = -0.80 Z = -0.71 Z = -0.62 \n",
"InjectedCurrentAPAmplitudeTest Z = -1.22 Z = -1.46 Z = -1.72 \n",
"InjectedCurrentAPThresholdTest Z = 1.59 Z = 1.96 Z = 2.39 \n",
"\n",
" V_rest=-50mV \n",
"RheobaseTest Ratio = 0.08 \n",
"InputResistanceTest Z = 0.29 \n",
"TimeConstantTest Z = 0.40 \n",
"CapacitanceTest Z = -0.14 \n",
"RestingPotentialTest Z = 2.79 \n",
"InjectedCurrentAPWidthTest Z = -0.52 \n",
"InjectedCurrentAPAmplitudeTest Z = -2.01 \n",
"InjectedCurrentAPThresholdTest Z = 2.85 "
]
},
"execution_count": 8,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"score_matrix.show_mean = True # Show the mean value across test scores. \n",
" # The mean is computed using the norm_score attribute, which is in the range [0,1] for\n",
" # all Score types\n",
"score_matrix.T"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Let's take a look at a sweep from one of these models ($V_{rest} = -60 mV$) obtained at the rheobase current. "
]
},
{
"cell_type": "code",
"execution_count": 9,
"metadata": {},
"outputs": [
{
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\n",
"text/plain": [
"<Figure size 432x288 with 1 Axes>"
]
},
"metadata": {
"needs_background": "light"
},
"output_type": "display_data"
}
],
"source": [
"score_matrix['RheobaseTest']['V_rest=-60mV'].plot_vm() # Plot the rheobase current from the model with V_rest = -60 mV"
]
}
],
"metadata": {
"kernelspec": {
"display_name": "Python 3",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.3"
}
},
"nbformat": 4,
"nbformat_minor": 4
}