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Makefile
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Makefile
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AWS_DEFAULT_REGION := us-east-1
export AWS_DEFAULT_REGION
CLOUDWATCH_FROM_DATE = $(shell ./scripts/determine-cloudwatch-from-date-based-on-existing-bigquery-data.sh)
CLOUDWATCH_TO_DATE = $(shell date '+%Y-%m-%d')
CLOUDWATCH_TARGET_DIR = ./logs/cloudwatch
CLOUDWATCH_JSONL_FILE = ./logs/ingress.jsonl
CLOUDWATCH_JSONL_SCHEMA_FILE = $(CLOUDWATCH_JSONL_FILE).bq-schema.json
RUN_GCLOUD = docker run \
--volumes-from gcloud-config \
--volume $$PWD/events.bq-schema.json:/events.bq-schema.json:ro \
--volume $$PWD/events.jsonl:/events.jsonl:ro \
--volume $$PWD/data:/data:ro \
--volume $$PWD/logs:/logs:ro \
--rm \
google/cloud-sdk:422.0.0-alpine
.PHONY: clean download-events-from-s3 ship-events-to-s3 update*
.env:
cp .env.example .env
gcloud-login:
docker run -ti --name gcloud-config google/cloud-sdk:422.0.0-alpine gcloud auth login
clean:
rm -r venv
venv: requirements.txt requirements.build.txt requirements.dev.txt
python3 -m venv venv
./venv/bin/pip install -r requirements.build.txt
./venv/bin/pip install \
-r requirements.txt \
-r requirements.dev.txt
dev-watch:
./venv/bin/python -m pytest_watch -- tests
ship-events-to-s3:
kubectl run --rm --attach ship-events \
--image=amazon/aws-cli:2.4.23 \
--command=true \
--restart=Never \
--env=PGHOST=$$(kubectl get secret hive-prod-rds-postgres -o json | jq -r '.data."postgresql-host"'| base64 -d) \
--env=PGDATABASE=$$(kubectl get secret hive-prod-rds-postgres -o json | jq -r '.data."postgresql-database"'| base64 -d) \
--env=PGUSER=$$(kubectl get secret hive-prod-rds-postgres -o json | jq -r '.data."postgresql-username"'| base64 -d) \
--env=PGPASSWORD=$$(kubectl get secret hive-prod-rds-postgres -o json | jq -r '.data."postgresql-password"'| base64 -d) \
--env=AWS_ACCESS_KEY_ID=$$(kubectl get secret sciety-events-shipper-aws-credentials -o json | jq -r '.data."id"'| base64 -d) \
--env=AWS_SECRET_ACCESS_KEY=$$(kubectl get secret sciety-events-shipper-aws-credentials -o json | jq -r '.data."secret"'| base64 -d) \
-- \
bash -c 'yum install --assumeyes --quiet postgresql \
&& psql -A -t -c "select json_agg(events) from events;" > ./events.json \
&& aws s3 cp "./events.json" "s3://sciety-data-extractions/events.json" \
'
download-events-from-s3:
aws s3 cp "s3://sciety-data-extractions/events.json" "./events.json"
.gs-events-json-to-jsonl:
cat ./events.json \
| jq -c '.[]' \
> ./events.jsonl \
.bq-generate-schema: venv .gs-events-json-to-jsonl
cat ./events.jsonl \
| venv/bin/generate-schema > events.bq-schema.json
.bq-update-events: .gs-events-json-to-jsonl .bq-generate-schema
$(RUN_GCLOUD) bq load \
--project_id=elife-data-pipeline \
--replace \
--schema=events.bq-schema.json \
--source_format=NEWLINE_DELIMITED_JSON \
de_proto.sciety_event_v1 \
./events.jsonl
.upload-events-from-db-to-bigquery:
$(MAKE) ship-events-to-s3
$(MAKE) download-events-from-s3
$(MAKE) .bq-update-events
.cloudwatch-show-info:
@echo "From: $(CLOUDWATCH_FROM_DATE)"
@echo "To: $(CLOUDWATCH_TO_DATE)"
@echo "Target dir: $(CLOUDWATCH_TARGET_DIR)"
.export-and-download-from-cloudwatch:
rm -rf "$(CLOUDWATCH_TARGET_DIR)"
./scripts/export-and-download-from-cloudwatch.sh \
"$(CLOUDWATCH_FROM_DATE)" \
"$(CLOUDWATCH_TO_DATE)" \
"$(CLOUDWATCH_TARGET_DIR)"
.convert-cloudwatch-logs-to-jsonl:
./scripts/convert-cloudwatch-logs-to-jsonl.sh \
"$(CLOUDWATCH_TARGET_DIR)" \
"$(CLOUDWATCH_JSONL_FILE)"
.generate-schema-for-cloudwatch-jsonl-file: venv
cat "$(CLOUDWATCH_JSONL_FILE)" \
| venv/bin/generate-schema \
> "$(CLOUDWATCH_JSONL_SCHEMA_FILE)"
.upload-ingress-jsonl-to-bigquery:
$(RUN_GCLOUD) bq load \
--project_id=elife-data-pipeline \
--noreplace \
--schema="$(CLOUDWATCH_JSONL_SCHEMA_FILE)" \
--schema_update_option=ALLOW_FIELD_ADDITION \
--source_format=NEWLINE_DELIMITED_JSON \
de_proto.sciety_ingress_v1 \
"$(CLOUDWATCH_JSONL_FILE)"
.do-upload-ingress-logs-from-cloudwatch-to-bigquery:
$(MAKE) .cloudwatch-show-info
$(MAKE) .export-and-download-from-cloudwatch
$(MAKE) .convert-cloudwatch-logs-to-jsonl
$(MAKE) .generate-schema-for-cloudwatch-jsonl-file
$(MAKE) .upload-ingress-jsonl-to-bigquery
.upload-ingress-logs-from-cloudwatch-to-bigquery:
@if [ "$(CLOUDWATCH_FROM_DATE)" = "$(CLOUDWATCH_TO_DATE)" ]; then \
echo "Not uploading cloudwatch ingress logs to BigQuery because it has already ran today."; \
else \
$(MAKE) CLOUDWATCH_FROM_DATE="$(CLOUDWATCH_FROM_DATE)" \
.do-upload-ingress-logs-from-cloudwatch-to-bigquery; \
fi
update-datastudio: \
.upload-events-from-db-to-bigquery
bq-update-known-users:
cat "data/sciety-known-users.json" \
| jq -c '.[]' \
| tee "data/sciety-known-users.jsonl" \
&& $(RUN_GCLOUD) bq load \
--project_id=elife-data-pipeline \
--autodetect \
--replace \
--source_format=NEWLINE_DELIMITED_JSON \
de_proto.sciety_known_user_v1 \
"data/sciety-known-users.jsonl"
generate-sciety-lists-json: venv
venv/bin/python -m sciety_data_pipeline.tools.convert_list_created_script_to_json \
--js-script=../sciety/src/data/hardcoded-list-creation-events.ts \
--output-json-file=data/sciety-lists.json
bq-update-lists:
cat "data/sciety-lists.json" \
| jq -c '.[]' \
| tee "data/sciety-lists.jsonl" \
&& bq load \
--project_id=elife-data-pipeline \
--autodetect \
--replace \
--source_format=NEWLINE_DELIMITED_JSON \
de_proto.sciety_list_v1 \
"data/sciety-lists.jsonl"