Change coordinates to reflectometry coordinate system

[arm61]

Currently an internal (or maybe NeXus) standard is used for what is x, y, and z. This doesn't work for reflectometry where there is already an accepted standard that depends on the sample orientation (see https://orsopy.readthedocs.io/en/latest/orsopy.fileio.base.html#orsopy.fileio.base.ValueVector). The Amor code should be modified to adhere to this reflectometry standard.