filters.py

# Copyright (C) 2003-2005 Peter J. Verveer
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions
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# 1. Redistributions of source code must retain the above copyright
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# 2. Redistributions in binary form must reproduce the above
#    copyright notice, this list of conditions and the following
#    disclaimer in the documentation and/or other materials provided
#    with the distribution.
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# 3. The name of the author may not be used to endorse or promote
#    products derived from this software without specific prior
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# WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
# ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY
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# DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
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from __future__ import division, print_function, absolute_import
import warnings
import numbers
import numpy
import operator
from . import _ni_support
from . import _nd_image
from . import _ni_docstrings

__all__ = ['correlate1d', 'convolve1d', 'gaussian_filter1d', 'gaussian_filter',
           'prewitt', 'sobel', 'generic_laplace', 'laplace',
           'gaussian_laplace', 'generic_gradient_magnitude',
           'gaussian_gradient_magnitude', 'correlate', 'convolve',
           'uniform_filter1d', 'uniform_filter', 'minimum_filter1d',
           'maximum_filter1d', 'minimum_filter', 'maximum_filter',
           'rank_filter', 'median_filter', 'percentile_filter',
           'generic_filter1d', 'generic_filter']


def _invalid_origin(origin, lenw):
    return (origin < -(lenw // 2)) or (origin > (lenw - 1) // 2)


@_ni_docstrings.docfiller
def correlate1d(input, weights, axis=-1, output=None, mode="reflect",
                cval=0.0, origin=0):
    """Calculate a one-dimensional correlation along the given axis.

    The lines of the array along the given axis are correlated with the
    given weights.

    Parameters
    ----------
    %(input)s
    weights : array
        One-dimensional sequence of numbers.
    %(axis)s
    %(output)s
    %(mode)s
    %(cval)s
    %(origin)s

    Examples
    --------
    >>> from scipy.ndimage import correlate1d
    >>> correlate1d([2, 8, 0, 4, 1, 9, 9, 0], weights=[1, 3])
    array([ 8, 26,  8, 12,  7, 28, 36,  9])
    """
    input = numpy.asarray(input)
    if numpy.iscomplexobj(input):
        raise TypeError('Complex type not supported')
    output = _ni_support._get_output(output, input)
    weights = numpy.asarray(weights, dtype=numpy.float64)
    if weights.ndim != 1 or weights.shape[0] < 1:
        raise RuntimeError('no filter weights given')
    if not weights.flags.contiguous:
        weights = weights.copy()
    axis = _ni_support._check_axis(axis, input.ndim)
    if _invalid_origin(origin, len(weights)):
        raise ValueError('Invalid origin; origin must satisfy '
                         '-(len(weights) // 2) <= origin <= '
                         '(len(weights)-1) // 2')
    mode = _ni_support._extend_mode_to_code(mode)
    _nd_image.correlate1d(input, weights, axis, output, mode, cval,
                          origin)
    return output


@_ni_docstrings.docfiller
def convolve1d(input, weights, axis=-1, output=None, mode="reflect",
               cval=0.0, origin=0):
    """Calculate a one-dimensional convolution along the given axis.

    The lines of the array along the given axis are convolved with the
    given weights.

    Parameters
    ----------
    %(input)s
    weights : ndarray
        One-dimensional sequence of numbers.
    %(axis)s
    %(output)s
    %(mode)s
    %(cval)s
    %(origin)s

    Returns
    -------
    convolve1d : ndarray
        Convolved array with same shape as input

    Examples
    --------
    >>> from scipy.ndimage import convolve1d
    >>> convolve1d([2, 8, 0, 4, 1, 9, 9, 0], weights=[1, 3])
    array([14, 24,  4, 13, 12, 36, 27,  0])
    """
    weights = weights[::-1]
    origin = -origin
    if not len(weights) & 1:
        origin -= 1
    return correlate1d(input, weights, axis, output, mode, cval, origin)


def _gaussian_kernel1d(sigma, order, radius):
    """
    Computes a 1D Gaussian convolution kernel.
    """
    if order < 0:
        raise ValueError('order must be non-negative')
    exponent_range = numpy.arange(order + 1)
    sigma2 = sigma * sigma
    x = numpy.arange(-radius, radius+1)
    phi_x = numpy.exp(-0.5 / sigma2 * x ** 2)
    phi_x = phi_x / phi_x.sum()

    if order == 0:
        return phi_x
    else:
        # f(x) = q(x) * phi(x) = q(x) * exp(p(x))
        # f'(x) = (q'(x) + q(x) * p'(x)) * phi(x)
        # p'(x) = -1 / sigma ** 2
        # Implement q'(x) + q(x) * p'(x) as a matrix operator and apply to the
        # coefficients of q(x)
        q = numpy.zeros(order + 1)
        q[0] = 1
        D = numpy.diag(exponent_range[1:], 1)  # D @ q(x) = q'(x)
        P = numpy.diag(numpy.ones(order)/-sigma2, -1)  # P @ q(x) = q(x) * p'(x)
        Q_deriv = D + P
        for _ in range(order):
            q = Q_deriv.dot(q)
        q = (x[:, None] ** exponent_range).dot(q)
        return q * phi_x


@_ni_docstrings.docfiller
def gaussian_filter1d(input, sigma, axis=-1, order=0, output=None,
                      mode="reflect", cval=0.0, truncate=4.0):
    """One-dimensional Gaussian filter.

    Parameters
    ----------
    %(input)s
    sigma : scalar
        standard deviation for Gaussian kernel
    %(axis)s
    order : int, optional
        An order of 0 corresponds to convolution with a Gaussian
        kernel. A positive order corresponds to convolution with
        that derivative of a Gaussian.
    %(output)s
    %(mode)s
    %(cval)s
    truncate : float, optional
        Truncate the filter at this many standard deviations.
        Default is 4.0.

    Returns
    -------
    gaussian_filter1d : ndarray

    Examples
    --------
    >>> from scipy.ndimage import gaussian_filter1d
    >>> gaussian_filter1d([1.0, 2.0, 3.0, 4.0, 5.0], 1)
    array([ 1.42704095,  2.06782203,  3.        ,  3.93217797,  4.57295905])
    >>> gaussian_filter1d([1.0, 2.0, 3.0, 4.0, 5.0], 4)
    array([ 2.91948343,  2.95023502,  3.        ,  3.04976498,  3.08051657])
    >>> import matplotlib.pyplot as plt
    >>> np.random.seed(280490)
    >>> x = np.random.randn(101).cumsum()
    >>> y3 = gaussian_filter1d(x, 3)
    >>> y6 = gaussian_filter1d(x, 6)
    >>> plt.plot(x, 'k', label='original data')
    >>> plt.plot(y3, '--', label='filtered, sigma=3')
    >>> plt.plot(y6, ':', label='filtered, sigma=6')
    >>> plt.legend()
    >>> plt.grid()
    >>> plt.show()
    """
    sd = float(sigma)
    # make the radius of the filter equal to truncate standard deviations
    lw = int(truncate * sd + 0.5)
    # Since we are calling correlate, not convolve, revert the kernel
    weights = _gaussian_kernel1d(sigma, order, lw)[::-1]
    return correlate1d(input, weights, axis, output, mode, cval, 0)


@_ni_docstrings.docfiller
def gaussian_filter(input, sigma, order=0, output=None,
                    mode="reflect", cval=0.0, truncate=4.0):
    """Multidimensional Gaussian filter.

    Parameters
    ----------
    %(input)s
    sigma : scalar or sequence of scalars
        Standard deviation for Gaussian kernel. The standard
        deviations of the Gaussian filter are given for each axis as a
        sequence, or as a single number, in which case it is equal for
        all axes.
    order : int or sequence of ints, optional
        The order of the filter along each axis is given as a sequence
        of integers, or as a single number.  An order of 0 corresponds
        to convolution with a Gaussian kernel. A positive order
        corresponds to convolution with that derivative of a Gaussian.
    %(output)s
    %(mode_multiple)s
    %(cval)s
    truncate : float
        Truncate the filter at this many standard deviations.
        Default is 4.0.

    Returns
    -------
    gaussian_filter : ndarray
        Returned array of same shape as `input`.

    Notes
    -----
    The multidimensional filter is implemented as a sequence of
    one-dimensional convolution filters. The intermediate arrays are
    stored in the same data type as the output. Therefore, for output
    types with a limited precision, the results may be imprecise
    because intermediate results may be stored with insufficient
    precision.

    Examples
    --------
    >>> from scipy.ndimage import gaussian_filter
    >>> a = np.arange(50, step=2).reshape((5,5))
    >>> a
    array([[ 0,  2,  4,  6,  8],
           [10, 12, 14, 16, 18],
           [20, 22, 24, 26, 28],
           [30, 32, 34, 36, 38],
           [40, 42, 44, 46, 48]])
    >>> gaussian_filter(a, sigma=1)
    array([[ 4,  6,  8,  9, 11],
           [10, 12, 14, 15, 17],
           [20, 22, 24, 25, 27],
           [29, 31, 33, 34, 36],
           [35, 37, 39, 40, 42]])

    >>> from scipy import misc
    >>> import matplotlib.pyplot as plt
    >>> fig = plt.figure()
    >>> plt.gray()  # show the filtered result in grayscale
    >>> ax1 = fig.add_subplot(121)  # left side
    >>> ax2 = fig.add_subplot(122)  # right side
    >>> ascent = misc.ascent()
    >>> result = gaussian_filter(ascent, sigma=5)
    >>> ax1.imshow(ascent)
    >>> ax2.imshow(result)
    >>> plt.show()
    """
    input = numpy.asarray(input)
    output = _ni_support._get_output(output, input)
    orders = _ni_support._normalize_sequence(order, input.ndim)
    sigmas = _ni_support._normalize_sequence(sigma, input.ndim)
    modes = _ni_support._normalize_sequence(mode, input.ndim)
    axes = list(range(input.ndim))
    axes = [(axes[ii], sigmas[ii], orders[ii], modes[ii])
            for ii in range(len(axes)) if sigmas[ii] > 1e-15]
    if len(axes) > 0:
        for axis, sigma, order, mode in axes:
            gaussian_filter1d(input, sigma, axis, order, output,
                              mode, cval, truncate)
            input = output
    else:
        output[...] = input[...]
    return output


@_ni_docstrings.docfiller
def prewitt(input, axis=-1, output=None, mode="reflect", cval=0.0):
    """Calculate a Prewitt filter.

    Parameters
    ----------
    %(input)s
    %(axis)s
    %(output)s
    %(mode_multiple)s
    %(cval)s

    Examples
    --------
    >>> from scipy import ndimage, misc
    >>> import matplotlib.pyplot as plt
    >>> fig = plt.figure()
    >>> plt.gray()  # show the filtered result in grayscale
    >>> ax1 = fig.add_subplot(121)  # left side
    >>> ax2 = fig.add_subplot(122)  # right side
    >>> ascent = misc.ascent()
    >>> result = ndimage.prewitt(ascent)
    >>> ax1.imshow(ascent)
    >>> ax2.imshow(result)
    >>> plt.show()
    """
    input = numpy.asarray(input)
    axis = _ni_support._check_axis(axis, input.ndim)
    output = _ni_support._get_output(output, input)
    modes = _ni_support._normalize_sequence(mode, input.ndim)
    correlate1d(input, [-1, 0, 1], axis, output, modes[axis], cval, 0)
    axes = [ii for ii in range(input.ndim) if ii != axis]
    for ii in axes:
        correlate1d(output, [1, 1, 1], ii, output, modes[ii], cval, 0,)
    return output


@_ni_docstrings.docfiller
def sobel(input, axis=-1, output=None, mode="reflect", cval=0.0):
    """Calculate a Sobel filter.

    Parameters
    ----------
    %(input)s
    %(axis)s
    %(output)s
    %(mode_multiple)s
    %(cval)s

    Examples
    --------
    >>> from scipy import ndimage, misc
    >>> import matplotlib.pyplot as plt
    >>> fig = plt.figure()
    >>> plt.gray()  # show the filtered result in grayscale
    >>> ax1 = fig.add_subplot(121)  # left side
    >>> ax2 = fig.add_subplot(122)  # right side
    >>> ascent = misc.ascent()
    >>> result = ndimage.sobel(ascent)
    >>> ax1.imshow(ascent)
    >>> ax2.imshow(result)
    >>> plt.show()
    """
    input = numpy.asarray(input)
    axis = _ni_support._check_axis(axis, input.ndim)
    output = _ni_support._get_output(output, input)
    modes = _ni_support._normalize_sequence(mode, input.ndim)
    correlate1d(input, [-1, 0, 1], axis, output, modes[axis], cval, 0)
    axes = [ii for ii in range(input.ndim) if ii != axis]
    for ii in axes:
        correlate1d(output, [1, 2, 1], ii, output, modes[ii], cval, 0)
    return output


@_ni_docstrings.docfiller
def generic_laplace(input, derivative2, output=None, mode="reflect",
                    cval=0.0,
                    extra_arguments=(),
                    extra_keywords=None):
    """
    N-dimensional Laplace filter using a provided second derivative function.

    Parameters
    ----------
    %(input)s
    derivative2 : callable
        Callable with the following signature::

            derivative2(input, axis, output, mode, cval,
                        *extra_arguments, **extra_keywords)

        See `extra_arguments`, `extra_keywords` below.
    %(output)s
    %(mode_multiple)s
    %(cval)s
    %(extra_keywords)s
    %(extra_arguments)s
    """
    if extra_keywords is None:
        extra_keywords = {}
    input = numpy.asarray(input)
    output = _ni_support._get_output(output, input)
    axes = list(range(input.ndim))
    if len(axes) > 0:
        modes = _ni_support._normalize_sequence(mode, len(axes))
        derivative2(input, axes[0], output, modes[0], cval,
                    *extra_arguments, **extra_keywords)
        for ii in range(1, len(axes)):
            tmp = derivative2(input, axes[ii], output.dtype, modes[ii], cval,
                              *extra_arguments, **extra_keywords)
            output += tmp
    else:
        output[...] = input[...]
    return output


@_ni_docstrings.docfiller
def laplace(input, output=None, mode="reflect", cval=0.0):
    """N-dimensional Laplace filter based on approximate second derivatives.

    Parameters
    ----------
    %(input)s
    %(output)s
    %(mode_multiple)s
    %(cval)s

    Examples
    --------
    >>> from scipy import ndimage, misc
    >>> import matplotlib.pyplot as plt
    >>> fig = plt.figure()
    >>> plt.gray()  # show the filtered result in grayscale
    >>> ax1 = fig.add_subplot(121)  # left side
    >>> ax2 = fig.add_subplot(122)  # right side
    >>> ascent = misc.ascent()
    >>> result = ndimage.laplace(ascent)
    >>> ax1.imshow(ascent)
    >>> ax2.imshow(result)
    >>> plt.show()
    """
    def derivative2(input, axis, output, mode, cval):
        return correlate1d(input, [1, -2, 1], axis, output, mode, cval, 0)
    return generic_laplace(input, derivative2, output, mode, cval)


@_ni_docstrings.docfiller
def gaussian_laplace(input, sigma, output=None, mode="reflect",
                     cval=0.0, **kwargs):
    """Multidimensional Laplace filter using gaussian second derivatives.

    Parameters
    ----------
    %(input)s
    sigma : scalar or sequence of scalars
        The standard deviations of the Gaussian filter are given for
        each axis as a sequence, or as a single number, in which case
        it is equal for all axes.
    %(output)s
    %(mode_multiple)s
    %(cval)s
    Extra keyword arguments will be passed to gaussian_filter().

    Examples
    --------
    >>> from scipy import ndimage, misc
    >>> import matplotlib.pyplot as plt
    >>> ascent = misc.ascent()

    >>> fig = plt.figure()
    >>> plt.gray()  # show the filtered result in grayscale
    >>> ax1 = fig.add_subplot(121)  # left side
    >>> ax2 = fig.add_subplot(122)  # right side

    >>> result = ndimage.gaussian_laplace(ascent, sigma=1)
    >>> ax1.imshow(result)

    >>> result = ndimage.gaussian_laplace(ascent, sigma=3)
    >>> ax2.imshow(result)
    >>> plt.show()
    """
    input = numpy.asarray(input)

    def derivative2(input, axis, output, mode, cval, sigma, **kwargs):
        order = [0] * input.ndim
        order[axis] = 2
        return gaussian_filter(input, sigma, order, output, mode, cval,
                               **kwargs)

    return generic_laplace(input, derivative2, output, mode, cval,
                           extra_arguments=(sigma,),
                           extra_keywords=kwargs)


@_ni_docstrings.docfiller
def generic_gradient_magnitude(input, derivative, output=None,
                               mode="reflect", cval=0.0,
                               extra_arguments=(), extra_keywords=None):
    """Gradient magnitude using a provided gradient function.

    Parameters
    ----------
    %(input)s
    derivative : callable
        Callable with the following signature::

            derivative(input, axis, output, mode, cval,
                       *extra_arguments, **extra_keywords)

        See `extra_arguments`, `extra_keywords` below.
        `derivative` can assume that `input` and `output` are ndarrays.
        Note that the output from `derivative` is modified inplace;
        be careful to copy important inputs before returning them.
    %(output)s
    %(mode_multiple)s
    %(cval)s
    %(extra_keywords)s
    %(extra_arguments)s
    """
    if extra_keywords is None:
        extra_keywords = {}
    input = numpy.asarray(input)
    output = _ni_support._get_output(output, input)
    axes = list(range(input.ndim))
    if len(axes) > 0:
        modes = _ni_support._normalize_sequence(mode, len(axes))
        derivative(input, axes[0], output, modes[0], cval,
                   *extra_arguments, **extra_keywords)
        numpy.multiply(output, output, output)
        for ii in range(1, len(axes)):
            tmp = derivative(input, axes[ii], output.dtype, modes[ii], cval,
                             *extra_arguments, **extra_keywords)
            numpy.multiply(tmp, tmp, tmp)
            output += tmp
        # This allows the sqrt to work with a different default casting
        numpy.sqrt(output, output, casting='unsafe')
    else:
        output[...] = input[...]
    return output


@_ni_docstrings.docfiller
def gaussian_gradient_magnitude(input, sigma, output=None,
                                mode="reflect", cval=0.0, **kwargs):
    """Multidimensional gradient magnitude using Gaussian derivatives.

    Parameters
    ----------
    %(input)s
    sigma : scalar or sequence of scalars
        The standard deviations of the Gaussian filter are given for
        each axis as a sequence, or as a single number, in which case
        it is equal for all axes..
    %(output)s
    %(mode_multiple)s
    %(cval)s
    Extra keyword arguments will be passed to gaussian_filter().

    Returns
    -------
    gaussian_gradient_magnitude : ndarray
        Filtered array. Has the same shape as `input`.

    Examples
    --------
    >>> from scipy import ndimage, misc
    >>> import matplotlib.pyplot as plt
    >>> fig = plt.figure()
    >>> plt.gray()  # show the filtered result in grayscale
    >>> ax1 = fig.add_subplot(121)  # left side
    >>> ax2 = fig.add_subplot(122)  # right side
    >>> ascent = misc.ascent()
    >>> result = ndimage.gaussian_gradient_magnitude(ascent, sigma=5)
    >>> ax1.imshow(ascent)
    >>> ax2.imshow(result)
    >>> plt.show()
    """
    input = numpy.asarray(input)

    def derivative(input, axis, output, mode, cval, sigma, **kwargs):
        order = [0] * input.ndim
        order[axis] = 1
        return gaussian_filter(input, sigma, order, output, mode,
                               cval, **kwargs)

    return generic_gradient_magnitude(input, derivative, output, mode,
                                      cval, extra_arguments=(sigma,),
                                      extra_keywords=kwargs)


def _correlate_or_convolve(input, weights, output, mode, cval, origin,
                           convolution):
    input = numpy.asarray(input)
    if numpy.iscomplexobj(input):
        raise TypeError('Complex type not supported')
    origins = _ni_support._normalize_sequence(origin, input.ndim)
    weights = numpy.asarray(weights, dtype=numpy.float64)
    wshape = [ii for ii in weights.shape if ii > 0]
    if len(wshape) != input.ndim:
        raise RuntimeError('filter weights array has incorrect shape.')
    if convolution:
        weights = weights[tuple([slice(None, None, -1)] * weights.ndim)]
        for ii in range(len(origins)):
            origins[ii] = -origins[ii]
            if not weights.shape[ii] & 1:
                origins[ii] -= 1
    for origin, lenw in zip(origins, wshape):
        if _invalid_origin(origin, lenw):
            raise ValueError('Invalid origin; origin must satisfy '
                             '-(weights.shape[k] // 2) <= origin[k] <= '
                             '(weights.shape[k]-1) // 2')

    if not weights.flags.contiguous:
        weights = weights.copy()
    output = _ni_support._get_output(output, input)
    mode = _ni_support._extend_mode_to_code(mode)
    _nd_image.correlate(input, weights, output, mode, cval, origins)
    return output


@_ni_docstrings.docfiller
def correlate(input, weights, output=None, mode='reflect', cval=0.0,
              origin=0):
    """
    Multi-dimensional correlation.

    The array is correlated with the given kernel.

    Parameters
    ----------
    %(input)s
    weights : ndarray
        array of weights, same number of dimensions as input
    %(output)s
    %(mode_multiple)s
    %(cval)s
    %(origin_multiple)s

    See Also
    --------
    convolve : Convolve an image with a kernel.
    """
    return _correlate_or_convolve(input, weights, output, mode, cval,
                                  origin, False)


@_ni_docstrings.docfiller
def convolve(input, weights, output=None, mode='reflect', cval=0.0,
             origin=0):
    """
    Multidimensional convolution.

    The array is convolved with the given kernel.

    Parameters
    ----------
    %(input)s
    weights : array_like
        Array of weights, same number of dimensions as input
    %(output)s
    %(mode_multiple)s
    cval : scalar, optional
        Value to fill past edges of input if `mode` is 'constant'. Default
        is 0.0
    %(origin_multiple)s

    Returns
    -------
    result : ndarray
        The result of convolution of `input` with `weights`.

    See Also
    --------
    correlate : Correlate an image with a kernel.

    Notes
    -----
    Each value in result is :math:`C_i = \\sum_j{I_{i+k-j} W_j}`, where
    W is the `weights` kernel,
    j is the n-D spatial index over :math:`W`,
    I is the `input` and k is the coordinate of the center of
    W, specified by `origin` in the input parameters.

    Examples
    --------
    Perhaps the simplest case to understand is ``mode='constant', cval=0.0``,
    because in this case borders (i.e. where the `weights` kernel, centered
    on any one value, extends beyond an edge of `input`) are treated as zeros.

    >>> a = np.array([[1, 2, 0, 0],
    ...               [5, 3, 0, 4],
    ...               [0, 0, 0, 7],
    ...               [9, 3, 0, 0]])
    >>> k = np.array([[1,1,1],[1,1,0],[1,0,0]])
    >>> from scipy import ndimage
    >>> ndimage.convolve(a, k, mode='constant', cval=0.0)
    array([[11, 10,  7,  4],
           [10,  3, 11, 11],
           [15, 12, 14,  7],
           [12,  3,  7,  0]])

    Setting ``cval=1.0`` is equivalent to padding the outer edge of `input`
    with 1.0's (and then extracting only the original region of the result).

    >>> ndimage.convolve(a, k, mode='constant', cval=1.0)
    array([[13, 11,  8,  7],
           [11,  3, 11, 14],
           [16, 12, 14, 10],
           [15,  6, 10,  5]])

    With ``mode='reflect'`` (the default), outer values are reflected at the
    edge of `input` to fill in missing values.

    >>> b = np.array([[2, 0, 0],
    ...               [1, 0, 0],
    ...               [0, 0, 0]])
    >>> k = np.array([[0,1,0], [0,1,0], [0,1,0]])
    >>> ndimage.convolve(b, k, mode='reflect')
    array([[5, 0, 0],
           [3, 0, 0],
           [1, 0, 0]])

    This includes diagonally at the corners.

    >>> k = np.array([[1,0,0],[0,1,0],[0,0,1]])
    >>> ndimage.convolve(b, k)
    array([[4, 2, 0],
           [3, 2, 0],
           [1, 1, 0]])

    With ``mode='nearest'``, the single nearest value in to an edge in
    `input` is repeated as many times as needed to match the overlapping
    `weights`.

    >>> c = np.array([[2, 0, 1],
    ...               [1, 0, 0],
    ...               [0, 0, 0]])
    >>> k = np.array([[0, 1, 0],
    ...               [0, 1, 0],
    ...               [0, 1, 0],
    ...               [0, 1, 0],
    ...               [0, 1, 0]])
    >>> ndimage.convolve(c, k, mode='nearest')
    array([[7, 0, 3],
           [5, 0, 2],
           [3, 0, 1]])

    """
    return _correlate_or_convolve(input, weights, output, mode, cval,
                                  origin, True)


@_ni_docstrings.docfiller
def uniform_filter1d(input, size, axis=-1, output=None,
                     mode="reflect", cval=0.0, origin=0):
    """Calculate a one-dimensional uniform filter along the given axis.

    The lines of the array along the given axis are filtered with a
    uniform filter of given size.

    Parameters
    ----------
    %(input)s
    size : int
        length of uniform filter
    %(axis)s
    %(output)s
    %(mode)s
    %(cval)s
    %(origin)s

    Examples
    --------
    >>> from scipy.ndimage import uniform_filter1d
    >>> uniform_filter1d([2, 8, 0, 4, 1, 9, 9, 0], size=3)
    array([4, 3, 4, 1, 4, 6, 6, 3])
    """
    input = numpy.asarray(input)
    if numpy.iscomplexobj(input):
        raise TypeError('Complex type not supported')
    axis = _ni_support._check_axis(axis, input.ndim)
    if size < 1:
        raise RuntimeError('incorrect filter size')
    output = _ni_support._get_output(output, input)
    if (size // 2 + origin < 0) or (size // 2 + origin >= size):
        raise ValueError('invalid origin')
    mode = _ni_support._extend_mode_to_code(mode)
    _nd_image.uniform_filter1d(input, size, axis, output, mode, cval,
                               origin)
    return output


@_ni_docstrings.docfiller
def uniform_filter(input, size=3, output=None, mode="reflect",
                   cval=0.0, origin=0):
    """Multi-dimensional uniform filter.

    Parameters
    ----------
    %(input)s
    size : int or sequence of ints, optional
        The sizes of the uniform filter are given for each axis as a
        sequence, or as a single number, in which case the size is
        equal for all axes.
    %(output)s
    %(mode_multiple)s
    %(cval)s
    %(origin_multiple)s

    Returns
    -------
    uniform_filter : ndarray
        Filtered array. Has the same shape as `input`.

    Notes
    -----
    The multi-dimensional filter is implemented as a sequence of
    one-dimensional uniform filters. The intermediate arrays are stored
    in the same data type as the output. Therefore, for output types
    with a limited precision, the results may be imprecise because
    intermediate results may be stored with insufficient precision.

    Examples
    --------
    >>> from scipy import ndimage, misc
    >>> import matplotlib.pyplot as plt
    >>> fig = plt.figure()
    >>> plt.gray()  # show the filtered result in grayscale
    >>> ax1 = fig.add_subplot(121)  # left side
    >>> ax2 = fig.add_subplot(122)  # right side
    >>> ascent = misc.ascent()
    >>> result = ndimage.uniform_filter(ascent, size=20)
    >>> ax1.imshow(ascent)
    >>> ax2.imshow(result)
    >>> plt.show()
    """
    input = numpy.asarray(input)
    output = _ni_support._get_output(output, input)
    sizes = _ni_support._normalize_sequence(size, input.ndim)
    origins = _ni_support._normalize_sequence(origin, input.ndim)
    modes = _ni_support._normalize_sequence(mode, input.ndim)
    axes = list(range(input.ndim))
    axes = [(axes[ii], sizes[ii], origins[ii], modes[ii])
            for ii in range(len(axes)) if sizes[ii] > 1]
    if len(axes) > 0:
        for axis, size, origin, mode in axes:
            uniform_filter1d(input, int(size), axis, output, mode,
                             cval, origin)
            input = output
    else:
        output[...] = input[...]
    return output


@_ni_docstrings.docfiller
def minimum_filter1d(input, size, axis=-1, output=None,
                     mode="reflect", cval=0.0, origin=0):
    """Calculate a one-dimensional minimum filter along the given axis.

    The lines of the array along the given axis are filtered with a
    minimum filter of given size.

    Parameters
    ----------
    %(input)s
    size : int
        length along which to calculate 1D minimum
    %(axis)s
    %(output)s
    %(mode)s
    %(cval)s
    %(origin)s

    Notes
    -----
    This function implements the MINLIST algorithm [1]_, as described by
    Richard Harter [2]_, and has a guaranteed O(n) performance, `n` being
    the `input` length, regardless of filter size.

    References
    ----------
    .. [1] http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.42.2777
    .. [2] http://www.richardhartersworld.com/cri/2001/slidingmin.html


    Examples
    --------
    >>> from scipy.ndimage import minimum_filter1d
    >>> minimum_filter1d([2, 8, 0, 4, 1, 9, 9, 0], size=3)
    array([2, 0, 0, 0, 1, 1, 0, 0])
    """
    input = numpy.asarray(input)
    if numpy.iscomplexobj(input):
        raise TypeError('Complex type not supported')
    axis = _ni_support._check_axis(axis, input.ndim)
    if size < 1:
        raise RuntimeError('incorrect filter size')
    output = _ni_support._get_output(output, input)
    if (size // 2 + origin < 0) or (size // 2 + origin >= size):
        raise ValueError('invalid origin')
    mode = _ni_support._extend_mode_to_code(mode)
    _nd_image.min_or_max_filter1d(input, size, axis, output, mode, cval,
                                  origin, 1)
    return output


@_ni_docstrings.docfiller
def maximum_filter1d(input, size, axis=-1, output=None,
                     mode="reflect", cval=0.0, origin=0):
    """Calculate a one-dimensional maximum filter along the given axis.

    The lines of the array along the given axis are filtered with a
    maximum filter of given size.

    Parameters
    ----------
    %(input)s
    size : int
        Length along which to calculate the 1-D maximum.
    %(axis)s
    %(output)s
    %(mode)s
    %(cval)s
    %(origin)s

    Returns
    -------
    maximum1d : ndarray, None
        Maximum-filtered array with same shape as input.
        None if `output` is not None

    Notes
    -----
    This function implements the MAXLIST algorithm [1]_, as described by
    Richard Harter [2]_, and has a guaranteed O(n) performance, `n` being
    the `input` length, regardless of filter size.

    References
    ----------
    .. [1] http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.42.2777
    .. [2] http://www.richardhartersworld.com/cri/2001/slidingmin.html

    Examples
    --------
    >>> from scipy.ndimage import maximum_filter1d
    >>> maximum_filter1d([2, 8, 0, 4, 1, 9, 9, 0], size=3)
    array([8, 8, 8, 4, 9, 9, 9, 9])
    """
    input = numpy.asarray(input)
    if numpy.iscomplexobj(input):
        raise TypeError('Complex type not supported')
    axis = _ni_support._check_axis(axis, input.ndim)
    if size < 1:
        raise RuntimeError('incorrect filter size')
    output = _ni_support._get_output(output, input)
    if (size // 2 + origin < 0) or (size // 2 + origin >= size):
        raise ValueError('invalid origin')
    mode = _ni_support._extend_mode_to_code(mode)
    _nd_image.min_or_max_filter1d(input, size, axis, output, mode, cval,
                                  origin, 0)
    return output


def _min_or_max_filter(input, size, footprint, structure, output, mode,
                       cval, origin, minimum):
    if (size is not None) and (footprint is not None):
        warnings.warn("ignoring size because footprint is set", UserWarning, stacklevel=3)
    if structure is None:
        if footprint is None:
            if size is None:
                raise RuntimeError("no footprint provided")
            separable = True
        else:
            footprint = numpy.asarray(footprint, dtype=bool)
            if not footprint.any():
                raise ValueError("All-zero footprint is not supported.")
            if footprint.all():
                size = footprint.shape
                footprint = None
                separable = True
            else:
                separable = False
    else:
        structure = numpy.asarray(structure, dtype=numpy.float64)
        separable = False
        if footprint is None:
            footprint = numpy.ones(structure.shape, bool)
        else:
            footprint = numpy.asarray(footprint, dtype=bool)
    input = numpy.asarray(input)
    if numpy.iscomplexobj(input):
        raise TypeError('Complex type not supported')
    output = _ni_support._get_output(output, input)
    origins = _ni_support._normalize_sequence(origin, input.ndim)
    if separable:
        sizes = _ni_support._normalize_sequence(size, input.ndim)
        modes = _ni_support._normalize_sequence(mode, input.ndim)
        axes = list(range(input.ndim))
        axes = [(axes[ii], sizes[ii], origins[ii], modes[ii])
                for ii in range(len(axes)) if sizes[ii] > 1]
        if minimum:
            filter_ = minimum_filter1d
        else:
            filter_ = maximum_filter1d
        if len(axes) > 0:
            for axis, size, origin, mode in axes:
                filter_(input, int(size), axis, output, mode, cval, origin)
                input = output
        else:
            output[...] = input[...]
    else:
        fshape = [ii for ii in footprint.shape if ii > 0]
        if len(fshape) != input.ndim:
            raise RuntimeError('footprint array has incorrect shape.')
        for origin, lenf in zip(origins, fshape):
            if (lenf // 2 + origin < 0) or (lenf // 2 + origin >= lenf):
                raise ValueError('invalid origin')
        if not footprint.flags.contiguous:
            footprint = footprint.copy()
        if structure is not None:
            if len(structure.shape) != input.ndim:
                raise RuntimeError('structure array has incorrect shape')
            if not structure.flags.contiguous:
                structure = structure.copy()
        mode = _ni_support._extend_mode_to_code(mode)
        _nd_image.min_or_max_filter(input, footprint, structure, output,
                                    mode, cval, origins, minimum)
    return output


@_ni_docstrings.docfiller
def minimum_filter(input, size=None, footprint=None, output=None,
                   mode="reflect", cval=0.0, origin=0):
    """Calculate a multi-dimensional minimum filter.

    Parameters
    ----------
    %(input)s
    %(size_foot)s
    %(output)s
    %(mode_multiple)s
    %(cval)s
    %(origin_multiple)s

    Returns
    -------
    minimum_filter : ndarray
        Filtered array. Has the same shape as `input`.

    Examples
    --------
    >>> from scipy import ndimage, misc
    >>> import matplotlib.pyplot as plt
    >>> fig = plt.figure()
    >>> plt.gray()  # show the filtered result in grayscale
    >>> ax1 = fig.add_subplot(121)  # left side
    >>> ax2 = fig.add_subplot(122)  # right side
    >>> ascent = misc.ascent()
    >>> result = ndimage.minimum_filter(ascent, size=20)
    >>> ax1.imshow(ascent)
    >>> ax2.imshow(result)
    >>> plt.show()
    """
    return _min_or_max_filter(input, size, footprint, None, output, mode,
                              cval, origin, 1)


@_ni_docstrings.docfiller
def maximum_filter(input, size=None, footprint=None, output=None,
                   mode="reflect", cval=0.0, origin=0):
    """Calculate a multi-dimensional maximum filter.

    Parameters
    ----------
    %(input)s
    %(size_foot)s
    %(output)s
    %(mode_multiple)s
    %(cval)s
    %(origin_multiple)s

    Returns
    -------
    maximum_filter : ndarray
        Filtered array. Has the same shape as `input`.

    Examples
    --------
    >>> from scipy import ndimage, misc
    >>> import matplotlib.pyplot as plt
    >>> fig = plt.figure()
    >>> plt.gray()  # show the filtered result in grayscale
    >>> ax1 = fig.add_subplot(121)  # left side
    >>> ax2 = fig.add_subplot(122)  # right side
    >>> ascent = misc.ascent()
    >>> result = ndimage.maximum_filter(ascent, size=20)
    >>> ax1.imshow(ascent)
    >>> ax2.imshow(result)
    >>> plt.show()
    """
    return _min_or_max_filter(input, size, footprint, None, output, mode,
                              cval, origin, 0)


@_ni_docstrings.docfiller
def _rank_filter(input, rank, size=None, footprint=None, output=None,
                 mode="reflect", cval=0.0, origin=0, operation='rank'):
    if (size is not None) and (footprint is not None):
        warnings.warn("ignoring size because footprint is set", UserWarning, stacklevel=3)
    input = numpy.asarray(input)
    if numpy.iscomplexobj(input):
        raise TypeError('Complex type not supported')
    origins = _ni_support._normalize_sequence(origin, input.ndim)
    if footprint is None:
        if size is None:
            raise RuntimeError("no footprint or filter size provided")
        sizes = _ni_support._normalize_sequence(size, input.ndim)
        footprint = numpy.ones(sizes, dtype=bool)
    else:
        footprint = numpy.asarray(footprint, dtype=bool)
    fshape = [ii for ii in footprint.shape if ii > 0]
    if len(fshape) != input.ndim:
        raise RuntimeError('filter footprint array has incorrect shape.')
    for origin, lenf in zip(origins, fshape):
        if (lenf // 2 + origin < 0) or (lenf // 2 + origin >= lenf):
            raise ValueError('invalid origin')
    if not footprint.flags.contiguous:
        footprint = footprint.copy()
    filter_size = numpy.where(footprint, 1, 0).sum()
    if operation == 'median':
        rank = filter_size // 2
    elif operation == 'percentile':
        percentile = rank
        if percentile < 0.0:
            percentile += 100.0
        if percentile < 0 or percentile > 100:
            raise RuntimeError('invalid percentile')
        if percentile == 100.0:
            rank = filter_size - 1
        else:
            rank = int(float(filter_size) * percentile / 100.0)
    if rank < 0:
        rank += filter_size
    if rank < 0 or rank >= filter_size:
        raise RuntimeError('rank not within filter footprint size')
    if rank == 0:
        return minimum_filter(input, None, footprint, output, mode, cval,
                              origins)
    elif rank == filter_size - 1:
        return maximum_filter(input, None, footprint, output, mode, cval,
                              origins)
    else:
        output = _ni_support._get_output(output, input)
        mode = _ni_support._extend_mode_to_code(mode)
        _nd_image.rank_filter(input, rank, footprint, output, mode, cval,
                              origins)
        return output


@_ni_docstrings.docfiller
def rank_filter(input, rank, size=None, footprint=None, output=None,
                mode="reflect", cval=0.0, origin=0):
    """Calculate a multi-dimensional rank filter.

    Parameters
    ----------
    %(input)s
    rank : int
        The rank parameter may be less then zero, i.e., rank = -1
        indicates the largest element.
    %(size_foot)s
    %(output)s
    %(mode_multiple)s
    %(cval)s
    %(origin_multiple)s

    Returns
    -------
    rank_filter : ndarray
        Filtered array. Has the same shape as `input`.

    Examples
    --------
    >>> from scipy import ndimage, misc
    >>> import matplotlib.pyplot as plt
    >>> fig = plt.figure()
    >>> plt.gray()  # show the filtered result in grayscale
    >>> ax1 = fig.add_subplot(121)  # left side
    >>> ax2 = fig.add_subplot(122)  # right side
    >>> ascent = misc.ascent()
    >>> result = ndimage.rank_filter(ascent, rank=42, size=20)
    >>> ax1.imshow(ascent)
    >>> ax2.imshow(result)
    >>> plt.show()
    """
    rank = operator.index(rank)
    return _rank_filter(input, rank, size, footprint, output, mode, cval,
                        origin, 'rank')


@_ni_docstrings.docfiller
def median_filter(input, size=None, footprint=None, output=None,
                  mode="reflect", cval=0.0, origin=0):
    """
    Calculate a multidimensional median filter.

    Parameters
    ----------
    %(input)s
    %(size_foot)s
    %(output)s
    %(mode_multiple)s
    %(cval)s
    %(origin_multiple)s

    Returns
    -------
    median_filter : ndarray
        Filtered array. Has the same shape as `input`.

    Examples
    --------
    >>> from scipy import ndimage, misc
    >>> import matplotlib.pyplot as plt
    >>> fig = plt.figure()
    >>> plt.gray()  # show the filtered result in grayscale
    >>> ax1 = fig.add_subplot(121)  # left side
    >>> ax2 = fig.add_subplot(122)  # right side
    >>> ascent = misc.ascent()
    >>> result = ndimage.median_filter(ascent, size=20)
    >>> ax1.imshow(ascent)
    >>> ax2.imshow(result)
    >>> plt.show()
    """
    return _rank_filter(input, 0, size, footprint, output, mode, cval,
                        origin, 'median')


@_ni_docstrings.docfiller
def percentile_filter(input, percentile, size=None, footprint=None,
                      output=None, mode="reflect", cval=0.0, origin=0):
    """Calculate a multi-dimensional percentile filter.

    Parameters
    ----------
    %(input)s
    percentile : scalar
        The percentile parameter may be less then zero, i.e.,
        percentile = -20 equals percentile = 80
    %(size_foot)s
    %(output)s
    %(mode_multiple)s
    %(cval)s
    %(origin_multiple)s

    Returns
    -------
    percentile_filter : ndarray
        Filtered array. Has the same shape as `input`.

    Examples
    --------
    >>> from scipy import ndimage, misc
    >>> import matplotlib.pyplot as plt
    >>> fig = plt.figure()
    >>> plt.gray()  # show the filtered result in grayscale
    >>> ax1 = fig.add_subplot(121)  # left side
    >>> ax2 = fig.add_subplot(122)  # right side
    >>> ascent = misc.ascent()
    >>> result = ndimage.percentile_filter(ascent, percentile=20, size=20)
    >>> ax1.imshow(ascent)
    >>> ax2.imshow(result)
    >>> plt.show()
    """
    return _rank_filter(input, percentile, size, footprint, output, mode,
                        cval, origin, 'percentile')


@_ni_docstrings.docfiller
def generic_filter1d(input, function, filter_size, axis=-1,
                     output=None, mode="reflect", cval=0.0, origin=0,
                     extra_arguments=(), extra_keywords=None):
    """Calculate a one-dimensional filter along the given axis.

    `generic_filter1d` iterates over the lines of the array, calling the
    given function at each line. The arguments of the line are the
    input line, and the output line. The input and output lines are 1D
    double arrays.  The input line is extended appropriately according
    to the filter size and origin. The output line must be modified
    in-place with the result.

    Parameters
    ----------
    %(input)s
    function : {callable, scipy.LowLevelCallable}
        Function to apply along given axis.
    filter_size : scalar
        Length of the filter.
    %(axis)s
    %(output)s
    %(mode)s
    %(cval)s
    %(origin)s
    %(extra_arguments)s
    %(extra_keywords)s

    Notes
    -----
    This function also accepts low-level callback functions with one of
    the following signatures and wrapped in `scipy.LowLevelCallable`:

    .. code:: c

       int function(double *input_line, npy_intp input_length,
                    double *output_line, npy_intp output_length,
                    void *user_data)
       int function(double *input_line, intptr_t input_length,
                    double *output_line, intptr_t output_length,
                    void *user_data)

    The calling function iterates over the lines of the input and output
    arrays, calling the callback function at each line. The current line
    is extended according to the border conditions set by the calling
    function, and the result is copied into the array that is passed
    through ``input_line``. The length of the input line (after extension)
    is passed through ``input_length``. The callback function should apply
    the filter and store the result in the array passed through
    ``output_line``. The length of the output line is passed through
    ``output_length``. ``user_data`` is the data pointer provided
    to `scipy.LowLevelCallable` as-is.

    The callback function must return an integer error status that is zero
    if something went wrong and one otherwise. If an error occurs, you should
    normally set the python error status with an informative message
    before returning, otherwise a default error message is set by the
    calling function.

    In addition, some other low-level function pointer specifications
    are accepted, but these are for backward compatibility only and should
    not be used in new code.

    """
    if extra_keywords is None:
        extra_keywords = {}
    input = numpy.asarray(input)
    if numpy.iscomplexobj(input):
        raise TypeError('Complex type not supported')
    output = _ni_support._get_output(output, input)
    if filter_size < 1:
        raise RuntimeError('invalid filter size')
    axis = _ni_support._check_axis(axis, input.ndim)
    if (filter_size // 2 + origin < 0) or (filter_size // 2 + origin >=
                                           filter_size):
        raise ValueError('invalid origin')
    mode = _ni_support._extend_mode_to_code(mode)
    _nd_image.generic_filter1d(input, function, filter_size, axis, output,
                               mode, cval, origin, extra_arguments,
                               extra_keywords)
    return output


@_ni_docstrings.docfiller
def generic_filter(input, function, size=None, footprint=None,
                   output=None, mode="reflect", cval=0.0, origin=0,
                   extra_arguments=(), extra_keywords=None):
    """Calculate a multi-dimensional filter using the given function.

    At each element the provided function is called. The input values
    within the filter footprint at that element are passed to the function
    as a 1D array of double values.

    Parameters
    ----------
    %(input)s
    function : {callable, scipy.LowLevelCallable}
        Function to apply at each element.
    %(size_foot)s
    %(output)s
    %(mode_multiple)s
    %(cval)s
    %(origin_multiple)s
    %(extra_arguments)s
    %(extra_keywords)s

    Notes
    -----
    This function also accepts low-level callback functions with one of
    the following signatures and wrapped in `scipy.LowLevelCallable`:

    .. code:: c

       int callback(double *buffer, npy_intp filter_size,
                    double *return_value, void *user_data)
       int callback(double *buffer, intptr_t filter_size,
                    double *return_value, void *user_data)

    The calling function iterates over the elements of the input and
    output arrays, calling the callback function at each element. The
    elements within the footprint of the filter at the current element are
    passed through the ``buffer`` parameter, and the number of elements
    within the footprint through ``filter_size``. The calculated value is
    returned in ``return_value``. ``user_data`` is the data pointer provided
    to `scipy.LowLevelCallable` as-is.

    The callback function must return an integer error status that is zero
    if something went wrong and one otherwise. If an error occurs, you should
    normally set the python error status with an informative message
    before returning, otherwise a default error message is set by the
    calling function.

    In addition, some other low-level function pointer specifications
    are accepted, but these are for backward compatibility only and should
    not be used in new code.

    """
    if (size is not None) and (footprint is not None):
        warnings.warn("ignoring size because footprint is set", UserWarning, stacklevel=2)
    if extra_keywords is None:
        extra_keywords = {}
    input = numpy.asarray(input)
    if numpy.iscomplexobj(input):
        raise TypeError('Complex type not supported')
    origins = _ni_support._normalize_sequence(origin, input.ndim)
    if footprint is None:
        if size is None:
            raise RuntimeError("no footprint or filter size provided")
        sizes = _ni_support._normalize_sequence(size, input.ndim)
        footprint = numpy.ones(sizes, dtype=bool)
    else:
        footprint = numpy.asarray(footprint, dtype=bool)
    fshape = [ii for ii in footprint.shape if ii > 0]
    if len(fshape) != input.ndim:
        raise RuntimeError('filter footprint array has incorrect shape.')
    for origin, lenf in zip(origins, fshape):
        if (lenf // 2 + origin < 0) or (lenf // 2 + origin >= lenf):
            raise ValueError('invalid origin')
    if not footprint.flags.contiguous:
        footprint = footprint.copy()
    output = _ni_support._get_output(output, input)
    mode = _ni_support._extend_mode_to_code(mode)
    _nd_image.generic_filter(input, function, footprint, output, mode,
                             cval, origins, extra_arguments, extra_keywords)
    return output