ci template

.travis.yml

@@ -8,27 +8,27 @@ git:
   quiet: true
 
 python:
-  - 3.6
-  - 3.7
+- 3.6
+- 3.7
 
 os:
-  - linux
+- linux
 
 addons:
   apt:
     packages:
-      - gfortran
+    - gfortran
 
 install: pip install -e .[tests]
 
 script:
-  - pytest -sv
-  - flake8
-  - mypy . --ignore-missing-imports
+- pytest -rsv
+- flake8
+- mypy . --ignore-missing-imports
 
 after_success:
-  - if [[ $TRAVIS_PYTHON_VERSION == 3.6* ]]; then
-    pytest --cov;
-    coveralls;
-    fi
+- if [[ $TRAVIS_PYTHON_VERSION == 3.6* ]]; then
+  pytest --cov --cov-config=setup.cfg;
+  coveralls;
+  fi
 

setup.cfg

@@ -21,7 +21,7 @@ long_description_content_type = text/markdown
 
 [options]
 python_requires = >= 3.6
-setup_requires = 
+setup_requires =
   setuptools >= 38.6
   pip >= 10
   twine >= 1.11
@@ -36,7 +36,7 @@ install_requires =
   gridaurora
 
 [options.extras_require]
-tests = 
+tests =
   pytest
   pytest-cov
   coveralls
@@ -64,12 +64,12 @@ omit =
 exclude_lines =
   pragma: no cover
   def __repr__
-  RuntimeError
-  NotImplementedError
-  ImportError
-  KeyError
-  FileNotFoundError
-  CalledProcessError
+  except RuntimeError
+  except NotImplementedError
+  except ImportError
+  except FileNotFoundError
+  except CalledProcessError
   logging.warning
-  ValueError
-  TypeError
+  logging.error
+  logging.critical
+  if __name__ == .__main__.:

tests/test_all.py

@@ -2,7 +2,7 @@
 from pathlib import Path
 import xarray
 from numpy import datetime64
-from numpy.testing import assert_allclose
+from pytest import approx
 import pytest
 import reesaurora as ra
 
@@ -22,16 +22,15 @@ def test_reesiono():
     Q = ra.reesiono(t, z, E, glat, glon, isotropic, datfn=R / 'data/SergienkoIvanov.h5', verbose=False)
     assert isinstance(Q, xarray.DataArray)
 # %%
-    assert_allclose(Q.alt_km.values, z)
-    assert_allclose(Q.energy.values, E)
+    assert Q.alt_km.values == approx(z)
+    assert Q.energy.values == approx(E)
     assert Q.time[0] == datetime64(t), 'times didnt match up'
 
     Qv = Q.squeeze()
     # Qv = Q[0].sum('species')  # total production
     # print([Qv[23,58],Qv[53,68]])
-    assert_allclose([Qv[23, 58], Qv[53, 68]],
-                    [8.186955e-04, 5.609914e-06], rtol=1e-5)
+    assert [Qv[23, 58], Qv[53, 68]] == approx([8.186955e-04, 5.609914e-06], rel=1e-5)
 
 
 if __name__ == '__main__':
-    pytest.main()
+    pytest.main(['-x', __file__])