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Problem with llvmlite version upon installation #2

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jr-leary7 opened this issue Dec 18, 2019 · 2 comments
Closed

Problem with llvmlite version upon installation #2

jr-leary7 opened this issue Dec 18, 2019 · 2 comments

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@jr-leary7
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When attempting to install (Anaconda 3.7.4), I receive the message:

Collecting llvmlite>=0.30.0dev0 (from numba>=0.46->pynndescent>=0.3.3->DigitalCellSorter) 

And then later:

Found existing installation: llvmlite 0.29.0
ERROR: Cannot uninstall 'llvmlite'. It is a distutils installed project and thus we cannot accurately determine which files belong to it which would lead to only a partial uninstall.

I checked the release notes for llvmlite, and the latest release is v0.29.0. The command I used to attempt to install DigitalCellSorter was python3.7 -m pip install DigitalCellSorter. Any help with regards to installation would be greatly appreciated.

@sdomanskyi
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This has to do with Anaconda being unable to upgrade its package llvmlite. The problem had been fixed in later versions of Anaconda. I recommend to export a list of installed packages. Then rename/remove your "anaconda" folder and install the latest version. Afterwards install DigitalCellSorter.
Note: trying to fix/upgrade existing installed version may be heavily time-consuming. Clean installation of anaconda is the fastest option.

@jr-leary7
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Once I reinstalled Anaconda and ran conda update conda and conda update anaconda everything went perfectly. Thank you!

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