conf.py

# -*- coding: utf-8 -*-
#
# Marvin documentation build configuration file, created by
# sphinx-quickstart on Sun Apr 10 08:50:42 2016.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

import sys
import os

# Importing matplotlib here with agg to prevent tkinter error in readthedocs
import matplotlib
matplotlib.use('agg')

# Comment if you do not want to use bootstrap themes.
import sphinx_bootstrap_theme
import marvin

try:
    marvin_version = marvin.__version__
except ValueError:
    marvin_version = 'dev'


# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
sys.path.insert(0, os.path.abspath('../../python/'))
sys.path.insert(0, os.path.abspath('../../../marvin_brain/python/brain/'))
sys.path.insert(0, os.path.abspath('../../python/marvin/utils/datamodel/'))

# -- General configuration ------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
# needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
    'sphinx.ext.autodoc', 'sphinx.ext.napoleon', 'sphinx.ext.autosummary',
    'sphinx.ext.todo', 'sphinx.ext.viewcode', 'sphinx.ext.mathjax',
    'matplotlib.sphinxext.only_directives',
    'matplotlib.sphinxext.plot_directive',
    'sphinxcontrib.httpdomain', 'sphinxcontrib.autohttp.flask',
    'sphinxcontrib.autohttp.flaskqref',
    'sphinx.ext.inheritance_diagram', 'sphinx.ext.graphviz',
    'IPython.sphinxext.ipython_console_highlighting',
    'IPython.sphinxext.ipython_directive', 'sphinx.ext.intersphinx', 'docudatamodel']

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
# source_parsers = {'.md': 'recommonmark.parser.CommonMarkParser'}
source_suffix = ['.rst', '.md']
# source_suffix = '.rst'

# The encoding of source files.
# source_encoding = 'utf-8-sig'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = u'Marvin'
copyright = u'2016-2017, Brian Cherinka, Brett Andrews, and José Sánchez-Gallego'
author = u'Brian Cherinka, Brett Andrews, and José Sánchez-Gallego'

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
version = marvin_version
# The full version, including alpha/beta/rc tags.
release = marvin_version

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None

# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
# today = ''
# Else, today_fmt is used as the format for a strftime call.
# today_fmt = '%B %d, %Y'

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This patterns also effect to html_static_path and html_extra_path
exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']

# The reST default role (used for this markup: `text`) to use for all
# documents.
default_role = 'py:obj'

# If true, '()' will be appended to :func: etc. cross-reference text.
# add_function_parentheses = True

# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
add_module_names = True

# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
# show_authors = False

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'

# A list of ignored prefixes for module index sorting.
# modindex_common_prefix = []

# If true, keep warnings as "system message" paragraphs in the built documents.
# keep_warnings = False

# Intersphinx mappings
intersphinx_mapping = {'python': ('https://docs.python.org/3.6', None),
                       'astropy': ('http://docs.astropy.org/en/latest', None),
                       'numpy': ('http://docs.scipy.org/doc/numpy/', None),
                       'pandas': ('http://pandas.pydata.org/pandas-docs/stable/', None)}

autodoc_member_order = 'groupwise'
modindex_common_prefix = ['marvin.']

napoleon_use_rtype = False
napoleon_use_ivar = True

rst_epilog = """
.. |numpy_array| replace:: Numpy array
.. _numpy_array: http://example.com/
.. |HDUList| replace:: :class:`~astropy.io.fits.HDUList`
"""

# -- Options for HTML output ----------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
html_theme = 'bootstrap'

# Theme options are theme-specific and customize the look and feel of a theme
# further.  For a list of options available for each theme, see the
# documentation.
html_theme_options = {
    # Navigation bar title. (Default: ``project`` value)
    'navbar_title': "Marvin Docs",

    # Tab name for entire site. (Default: "Site")
    'navbar_site_name': "Site",

    # A list of tuples containing pages or urls to link to.
    # Valid tuples should be in the following forms:
    #    (name, page)                 # a link to a page
    #    (name, "/aa/bb", 1)          # a link to an arbitrary relative url
    #    (name, "http://example.com", True) # arbitrary absolute url
    # Note the "1" or "True" value above as the third argument to indicate
    # an arbitrary url.
    'navbar_links': [
        ("Go to Marvin »", "https://sas.sdss.org/marvin2/", True),
        ("Cheatsheet", "cheatsheet"),
        # ("Tutorials", "tutorials"),
        ("New Issue", "https://github.com/sdss/marvin/issues/new", True)
    ],

    # Render the next and previous page links in navbar. (Default: true)
    'navbar_sidebarrel': False,

    # Render the current pages TOC in the navbar. (Default: true)
    'navbar_pagenav': True,

    # Tab name for the current pages TOC. (Default: "Page")
    'navbar_pagenav_name': "Page",

    # Global TOC depth for "site" navbar tab. (Default: 1)
    # Switching to -1 shows all levels.
    'globaltoc_depth': 2,

    # Include hidden TOCs in Site navbar?
    #
    # Note: If this is "false", you cannot have mixed ``:hidden:`` and
    # non-hidden ``toctree`` directives in the same page, or else the build
    # will break.
    #
    # Values: "true" (default) or "false"
    'globaltoc_includehidden': "true",

    # HTML navbar class (Default: "navbar") to attach to <div> element.
    # For black navbar, do "navbar navbar-inverse"
    'navbar_class': "navbar",

    # Fix navigation bar to top of page?
    # Values: "true" (default) or "false"
    'navbar_fixed_top': "true",

    # Location of link to source.
    # Options are "nav" (default), "footer" or anything else to exclude.
    'source_link_position': "nav",

    # Bootswatch (http://bootswatch.com/) theme.
    #
    # Options are nothing (default) or the name of a valid theme
    # such as "amelia" or "cosmo".
    'bootswatch_theme': "flatly",

    # Choose Bootstrap version.
    # Values: "3" (default) or "2" (in quotes)
    'bootstrap_version': "3",
}

# Add any paths that contain custom themes here, relative to this directory.
html_theme_path = sphinx_bootstrap_theme.get_html_theme_path()

# The name for this set of Sphinx documents.
# "<project> v<release> documentation" by default.
# html_title = u'Marvin v2.0.0'

# A shorter title for the navigation bar.  Default is the same as html_title.
# html_short_title = None

# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
# html_logo = None

# The name of an image file (relative to this directory) to use as a favicon of
# the docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
html_favicon = '_static/marvin_favicon.ico'

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']

# Add any extra paths that contain custom files (such as robots.txt or
# .htaccess) here, relative to this directory. These files are copied
# directly to the root of the documentation.
# html_extra_path = []

# If not None, a 'Last updated on:' timestamp is inserted at every page
# bottom, using the given strftime format.
# The empty string is equivalent to '%b %d, %Y'.
# html_last_updated_fmt = None

# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
# html_use_smartypants = True

# Custom sidebar templates, maps document names to template names.
# html_sidebars = {'**': ['globaltoc.html', 'sourcelink.html', 'searchbox.html']}
html_sidebars = {'**': ['localtoc.html']}

# Additional templates that should be rendered to pages, maps page names to
# template names.
# html_additional_pages = {}

# If false, no module index is generated.
# html_domain_indices = True

# If false, no index is generated.
# html_use_index = True

# If true, the index is split into individual pages for each letter.
# html_split_index = False

# If true, links to the reST sources are added to the pages.
# html_show_sourcelink = True

# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
# html_show_sphinx = True

# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
# html_show_copyright = True

# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it.  The value of this option must be the
# base URL from which the finished HTML is served.
# html_use_opensearch = ''

# This is the file name suffix for HTML files (e.g. ".xhtml").
# html_file_suffix = None

# Language to be used for generating the HTML full-text search index.
# Sphinx supports the following languages:
#   'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja'
#   'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh'
# html_search_language = 'en'

# A dictionary with options for the search language support, empty by default.
# 'ja' uses this config value.
# 'zh' user can custom change `jieba` dictionary path.
# html_search_options = {'type': 'default'}

# The name of a javascript file (relative to the configuration directory) that
# implements a search results scorer. If empty, the default will be used.
# html_search_scorer = 'scorer.js'

# Output file base name for HTML help builder.
htmlhelp_basename = 'Marvindoc'

# -- Options for LaTeX output ---------------------------------------------

latex_elements = {
    # The paper size ('letterpaper' or 'a4paper').
    # 'papersize': 'letterpaper',

    # The font size ('10pt', '11pt' or '12pt').
    # 'pointsize': '10pt',

    # Additional stuff for the LaTeX preamble.
    # 'preamble': '',

    # Latex figure (float) alignment
    # 'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
#  author, documentclass [howto, manual, or own class]).
latex_documents = [
    (master_doc, 'Marvin.tex', u'Marvin Documentation',
     u'Brian Cherinka, Brett Andrews, and José Sánchez-Gallego', 'manual'),
]

# The name of an image file (relative to this directory) to place at the top of
# the title page.
# latex_logo = None

# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
# latex_use_parts = False

# If true, show page references after internal links.
# latex_show_pagerefs = False

# If true, show URL addresses after external links.
# latex_show_urls = False

# Documents to append as an appendix to all manuals.
# latex_appendices = []

# If false, no module index is generated.
# latex_domain_indices = True


# -- Options for manual page output ---------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    (master_doc, 'marvin', u'Marvin Documentation',
     [author], 1)
]

# If true, show URL addresses after external links.
# man_show_urls = False


# -- Options for Texinfo output -------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (master_doc, 'Marvin', u'Marvin Documentation',
     author, 'Marvin', 'One line description of project.',
     'Miscellaneous'),
]

# Documents to append as an appendix to all manuals.
# texinfo_appendices = []

# If false, no module index is generated.
# texinfo_domain_indices = True

# How to display URL addresses: 'footnote', 'no', or 'inline'.
# texinfo_show_urls = 'footnote'

# If true, do not generate a @detailmenu in the "Top" node's menu.
# texinfo_no_detailmenu = False

# -- Extensions to the  Napoleon GoogleDocstring class ---------------------

from sphinx.ext.napoleon.docstring import GoogleDocstring


# first, we define new methods for any new sections and add them to the class
def parse_class_attributes_section(self, section):
    return self._format_fields('Class Attributes', self._consume_fields())
GoogleDocstring._parse_class_attributes_section = parse_class_attributes_section


# we now patch the parse method to guarantee that the the above methods are
# assigned to the _section dict
def patched_parse(self):
    self._sections['class attributes'] = self._parse_class_attributes_section
    self._unpatched_parse()
GoogleDocstring._unpatched_parse = GoogleDocstring._parse
GoogleDocstring._parse = patched_parse


# -- Use the custom css file in readthedocs --
def setup(app):
    app.add_stylesheet('custom.css')