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@segrelab

Segrè Lab

README.md

Daniel Segrè Lab at Boston University

Through mathematical modeling and experiments, we study the dynamics and evolution of metabolic networks in living systems. We are interested both in the fundamental principles of biological organization and in applications to environmental sustainability and human health.

To learn more about the lab, visit our website.

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  1. comets comets Public

    Computation of Microbial Ecosystems in Time and Space

    Forth 19 10

  2. cometspy cometspy Public

    Python interface for running COMETS simulations and analyzing the results

    Python 11 9

  3. comets-toolbox comets-toolbox Public

    MATLAB scripts and utilities for the COMETS software for spatial DFBA

    MATLAB 2 3

  4. MiCoNE MiCoNE Public

    The Microbial Co-occurrence Network Explorer

    Python 19 4

Repositories

9 results for all repositories written in Python sorted by last updated
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Showing 9 of 9 repositories
  • cometspy Public

    Python interface for running COMETS simulations and analyzing the results

    segrelab/cometspy’s past year of commit activity
    Python 11 GPL-3.0 9 18 0 Updated Jun 26, 2024
  • GEM2CUE Public
    segrelab/GEM2CUE’s past year of commit activity
    Python 0 MIT 0 5 0 Updated May 10, 2024
  • MiCoNE Public

    The Microbial Co-occurrence Network Explorer

    segrelab/MiCoNE’s past year of commit activity
    Python 19 MIT 4 0 1 Updated Oct 17, 2023
  • escher-maps Public

    Universal ModelSEED Escher maps

    segrelab/escher-maps’s past year of commit activity
    Python 0 0 3 0 Updated Aug 11, 2023
  • GEM-utilities Public
    segrelab/GEM-utilities’s past year of commit activity
    Python 0 0 21 (1 issue needs help) 1 Updated Aug 11, 2023
  • string-chemistry Public
    segrelab/string-chemistry’s past year of commit activity
    Python 1 1 0 1 Updated Jul 6, 2023
  • comets-manual Public

    Documentation for using the COMETS application and related tools

    segrelab/comets-manual’s past year of commit activity
    Python 1 2 0 1 Updated Dec 1, 2022
  • moss Public

    Prediction of representative phenotypes using multi-output subset selection

    segrelab/moss’s past year of commit activity
    Python 0 1 0 0 Updated Jul 25, 2022
  • COMETSDatabase Public Forked from brownmp/COMETSDatabase
    segrelab/COMETSDatabase’s past year of commit activity
    Python 0 1 0 0 Updated May 9, 2018

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