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metadata.yaml
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metadata.yaml
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# To be filled by the author(s) at the time of submission
# -------------------------------------------------------
# Title of the article:
# - For a successful replication, it should be prefixed with "[Re]"
# - For a failed replication, it should be prefixed with "[¬Re]"
# - For other article types, no instruction (but please, not too long)
title: "[Re] Measures for investigating the contextual modulation of information transmission"
# List of authors with name, orcid number, email and affiliation
# Affiliation "*" means contact author
authors:
- name: Sepehr Mahmoudian
orcid: 0000-0003-0884-9343
email: sepehr.mahmoudian@gmail.com
affiliations: 1,2,*
# List of affiliations with code (corresponding to author affiliations), name
# and address. You can also use these affiliations to add text such as "Equal
# contributions" as name (with no address).
affiliations:
- code: 1
name: Department of Data-driven Analysis of Biological Networks, Campus Institute for Dynamics of Biological Networks, Georg August University Göttingen
address: Göttingen, Germany
- code: 2
name: MEG Unit, Brain Imaging Center, Goethe University Frankfurt
address: Frankfurt, Germany
# List of keywords (adding the programming language might be a good idea)
keywords: information theory, contextual amplification, python
# Code URL and DOI/SWH (url is mandatory for replication, doi after acceptance)
# You can get a DOI for your code from Zenodo, or an SWH identifier from
# Software Heritage.
# see https://guides.github.com/activities/citable-code/
code:
- url: https://github.com/sepehrmn/mahmoudian-2020-rescience
- doi:
- swh: swh:1:dir:c707f7af830f2cf32cf42c9515cc95ffd5fc5e2c
# Date URL and DOI (optional if no data)
data:
- url:
- doi:
# Information about the original article that has been replicated
replication:
- cite: Smyth, D., Phillips, W. A. and Kay, J.(1996)'Measures for investigating the contextual modulation of information transmission',Network:Computation in Neural Systems,7:2,307 — 316 # Full textual citation
- bib: Smyth1996 # Bibtex key (if any) in your bibliography file
- url: https://www.tandfonline.com/doi/abs/10.1088/0954-898X_7_2_011 # URL to the PDF, try to link to a non-paywall version
- doi: 10.1088/0954-898X/7/2/011 # Regular digital object identifier
# Don't forget to surround abstract with double quotes
abstract: "The input to a neuron can be categorized as driving or contextual.
There are many ways to write formulations for contextual amplification.
information theory can be used to study the different forms
of information transmission. Here the original article on using three-way
mutual and conditional mutual information to study contextual amplification
is replicated and the Python code is made public."
# Bibliography file (yours)
bibliography: bibliography.bib
# Type of the article
# Type can be:
# * Editorial
# * Letter
# * Replication
type: Replication
# Scientific domain of the article (e.g. Computational Neuroscience)
# (one domain only & try to be not overly specific)
domain: Computational Neuroscience
# Coding language (main one only if several)
language: Python
# To be filled by the author(s) after acceptance
# -----------------------------------------------------------------------------
# For example, the URL of the GitHub issue where review actually occured
review:
- url: https://github.com/ReScience/submissions/issues/29
contributors:
- name: Olivia Guest
orcid: 0000-0002-1891-0972
role: editor
- name: Reubs J Walsh
orcid: 0000-0002-5592-7562
role: reviewer
- name: Daniel Schmid
orcid: 0000-0002-2439-9453
role: reviewer
- name: Abdullah Makkeh
orcid: 0000-0002-3581-8262
role: reviewer
# This information will be provided by the editor
dates:
- received: April 18, 2020
- accepted: June 5, 2020
- published: June 9, 2020
# This information will be provided by the editor
article:
- number: 2 # Article number will be automatically assigned during publication
- doi: 10.5281/zenodo.3885793 # DOI from Zenodo
- url: https://zenodo.org/record/3885793/files/Reproduction_of_Smyth_et_al__1996.pdf # Final PDF URL (Zenodo or rescience website?)
# This information will be provided by the editor
journal:
- name: "ReScience C"
- issn: 2430-3658
- volume: 6
- issue: 3