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README.Rmd
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README.Rmd
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---
output: github_document
always_allow_html: yes
---
<!-- README.md is generated from README.Rmd. Please edit that file -->
```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "man/figures/README-",
out.width = "50%"
)
```
# FungalSporeAnalysis
<!-- <!-- badges: start -->
<!-- [![platform](https://img.shields.io/badge/R-%3E%20v3.5.1-brightgreen)](https://shields.io/category/platform-support) -->
<!-- <!-- badges: end -->
Fungal spore analysis is a repository and package consisting of functions used to analyze genomics data of fungal spores. Following functions have been iteratively used in the analysis;
- `genelist_specific_profileplot`
- `profiles_normalized_by_control`
- `lineplot_from_bw`
- `ggplot_heatmap`
- `GO_diamond`
- `bw_corr`
### Install
```
install.packages("devtools")
install.packages("BiocManager")
devtools::install_github("sethiyap/FungalSporeAnalysis",repos=BiocManager::repositories(),dependencies=TRUE,build = FALSE)
```
For more details on functions and analysis see <https://sethiyap.github.io/FungalSporeAnalysis/articles/pkgdown.html>.