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3d small object cannot removed when use cc3d. connected-compoenents? #29

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selvakarna opened this issue Jul 4, 2019 · 4 comments
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@selvakarna
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3d small object cannot removed when use cc3d. connected-compoenents?:

from reference : #21

its not workin @william-silversmith

@william-silversmith william-silversmith added the question Further information is requested label Jul 4, 2019
@william-silversmith
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william-silversmith commented Jul 4, 2019

The code you referenced looks correct to me. Are you sure you're getting some mask_ids back? Maybe try a bigger dust_threshold, 50 is very small (a 4x4x4 cube is bigger). I often go as high as 1000.

@selvakarna
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Hi @william-silversmith ,
if i increase threshold as 10000 , its error. can you share sample code remove , unwanted small 3d volume?

@william-silversmith
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Can you share the error? The code you were using looked good to me. If you want to try something else, you can give https://github.com/seung-lab/fastremap/ a try.

@selvakarna
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Okay @william-silversmith

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