agate_config_example.cnf

% %%%% agate - mission configuration file %%%
% create a new file for each glider and mission
% Guide for creating configuration files:  
%    https://sfregosi.github.io/agate-public/configuration.html

% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% %%% TEMPLATE - PUT SURVEY METADATA HERE %%%
% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% %%%% REQUIRED CONFIG PARAMETERS %%%%%%%%%%%
% define glider and mission information
CONFIG.glider = 'sgXXX';
CONFIG.mission = 'Location_Mon20XX'; % defined in sg_calib_constants.m 
CONFIG.sgVer = XX.XX; % 66.12 or 67.0
CONFIG.tmd = XX; % target mission duration in days

% define paths
% mission path - path to umbrella folder that either contains previously 
%                downloaded basestation and output files or will contain 
%                downloaded and processed/produced files and figures
CONFIG.path.mission = 'C:\Users\User.Name\Desktop\sgXXX_Location_Mon20XX\';
% analysis path - optional path to an 'analysis' folder that would typically
%                 contain the outputs of acoustic analyses (e.g., Pamguard
%                 or Triton)
CONFIG.path.analysis = 'C:\Users\User.Name\project\analysis';


% %%%% OPTIONAL - basestation %%%%%%%%%%%%%%%
% specify basestation configuration file
CONFIG.bs.cnfFile = 'C:\Users\User.Name\Documents\gliders\basestation.cnf';
% specify path to store downloaded basestation files
CONFIG.path.bsLocal = fullfile(CONFIG.path.mission, 'basestationFiles\');


% %%%% OPTIONAL - acoustics %%%%%%%%%%%%%%%%%
% PMAR settings
CONFIG.pm.loggers = 0; % 1 for active, 0 for inactive
CONFIG.pm.activeCard = 0; % current active card; optional for sgVer 66.12 
                          % (will be updated in log file automatically);
                          % necessary to update throughout mission for sgVer 67.0
CONFIG.pm.numCards = 4; % total number loaded SD cards
% after mission is complete, set below for raw .dat file conversion
CONFIG.pm.convert = 0; % 0 during mission, set 1 to run conversion
CONFIG.pm.convCnfFile = fullfile(CONFIG.path.mission, 'PMARConvert_sgXXX_Location_MonYYYY.cnf');

% WISPR settings
CONFIG.ws.loggers = 0; % 1 for active, 0 for inactive

% %%%% OPTIONAL - plotting %%%%%%%%%%%%%%%%%%
% maps
% path to basemap files (land shape files and bathymetry rasters)
CONFIG.path.shp = 'C:\Users\User.Name\Documents\GIS\';
% optional: can specify full path to bathymetry file, otherwise agate 
% will prompt to select file
CONFIG.map.bathyFile =  'C:\Users\User.Name\Documents\GIS\etopo\etopo1_ice_g_i2.bin';
% define map extents and location of map elements
CONFIG.map.latLim = [000.00 000.00];
CONFIG.map.lonLim = [-000.00 -000.00];
CONFIG.map.naLat = 00.00; % optional arguments for north arrow location on map; 
                          % leave empty '[]' for no north arrow
CONFIG.map.naLon = 000.00;
CONFIG.map.scalePos = [0 0]; % optional arguments for scale bar location 
                             % and ticks, leave empty '[]' for no scale bar
CONFIG.map.scaleMajor = [0:50:100];
CONFIG.map.scaleMinor = [0:12.5:25];

% general plotting settings
% pre allocate fig numbers so figures are updated rather than created new
CONFIG.plots.figSeed = 111; % suggest using the glider serial e.g., 639
CONFIG.plots.figNumList = CONFIG.plots.figSeed + [0 1 2 3 4 5 6 7 8 9]; 
% figNumList (1) = battery, (2) = voltagePackUse, (3) = humidity
% and pressure, (4) = map, (5) = zoomed map, (6) = minimum voltage, 
% (7) = voltage normalized, (8) = ERMA detections, (9) = ERMA reference

% load plot positions 
% load('C:\Users\User.Name\Documents\gliders\figPositions.mat');
% CONFIG.plots.positions = positions;