Skip to content
This repository has been archived by the owner on Oct 15, 2020. It is now read-only.

Document data generation for unit test #29

Open
eric-czech opened this issue Aug 20, 2020 · 0 comments
Open

Document data generation for unit test #29

eric-czech opened this issue Aug 20, 2020 · 0 comments

Comments

@eric-czech
Copy link
Collaborator

See: #20 (comment)

Much like https://github.com/pystatgen/sgkit/pull/66 and https://github.com/pystatgen/sgkit/pull/76, the current pysnptools unit test uses randomly generated data from external software (Hail). This is in a validation folder within sgkit, so it may make sense to start doing the same thing in satellite repos, but it will lessen the burden for it if we wait until the multi-repo decision is final (https://github.com/pystatgen/sgkit/issues/65).

In any case, the code that generated the test data should moved somewhere central and documented. It lives here now: https://github.com/eric-czech/sgkit-dev/tree/master/io/plink

Sign up for free to subscribe to this conversation on GitHub. Already have an account? Sign in.
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant