Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

hecatomb.config.yaml #108

Closed
wuhuiyun07 opened this issue Mar 12, 2024 · 1 comment
Closed

hecatomb.config.yaml #108

wuhuiyun07 opened this issue Mar 12, 2024 · 1 comment

Comments

@wuhuiyun07
Copy link

In my hecatomb.config.yaml the path is
conda_prefix: /usr/local/lib/python3.12/site-packages/hecatomb/snakemake/conda.
How can I modify this path and how can I define it?

Error message:
Traceback (most recent call last):
File "/usr/local/lib/python3.12/site-packages/snakemake/init.py", line 792, in snakemake
success = workflow.execute(
^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/snakemake/workflow.py", line 842, in execute
self._persistence = Persistence(
^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/snakemake/persistence.py", line 111, in init
os.makedirs(d, exist_ok=True)
File "", line 225, in makedirs
OSError: [Errno 30] Read-only file system: '/usr/local/lib/python3.12/site-packages/hecatomb/snakemake/conda'

@wuhuiyun07
Copy link
Author

Issue solved. I download a docker image and it was not working. I followed the conda installation and it worked.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant