scHOT: single-cell higher order testing

Installation

scHOT is available as a Bioconductor package

For the latest release, install scHOT using BiocManager:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scHOT")

Alternatively, install the development version of scHOT using devtools:

library(devtools)
devtools::install_github("shazanfar/scHOT")

Vignette

You can find the latest vignette at this website: https://shazanfar.github.io/scHOT/.

Contact

shila.ghazanfar <at> sydney.edu.au

Citation

Ghazanfar, S., Lin, Y., Su, X. et al. Investigating higher-order interactions in single-cell data with scHOT. Nat Methods 17, 799--806 (2020). https://doi.org/10.1038/s41592-020-0885-x