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d145DMRfind_1222.log
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d145DMRfind_1222.log
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methylpy DMRfind --allc-files EPI-175_S14_L003_5xmerg_allc.tsv EPI-176_S15_L003_5xmerg_allc.tsv EPI-181_S16_L003_5xmerg_allc.tsv EPI-182_S17_L003_5xmerg_allc.tsv EPI-184_S18_L003_5xmerg_allc.tsv EPI-185_S19_L003_5xmerg_allc.tsv EPI-187_S20_L003_5xmerg_allc.tsv EPI-188_S21_L003_5xmerg_allc.tsv EPI-193_S22_L003_5xmerg_allc.tsv EPI-194_S23_L003_5xmerg_allc.tsv EPI-199_S24_L003_5xmerg_allc.tsv EPI-200_S25_L003_5xmerg_allc.tsv EPI-205_S26_L004_5xmerg_allc.tsv EPI-206_S27_L004_5xmerg_allc.tsv EPI-208_S28_L004_5xmerg_allc.tsv EPI-209_S29_L004_5xmerg_allc.tsv EPI-214_S30_L004_5xmerg_allc.tsv EPI-215_S31_L004_5xmerg_allc.tsv EPI-220_S32_L004_5xmerg_allc.tsv EPI-221_S33_L004_5xmerg_allc.tsv EPI-226_S34_L004_5xmerg_allc.tsv EPI-227_S35_L004_5xmerg_allc.tsv EPI-229_S36_L004_5xmerg_allc.tsv EPI-230_S37_L004_5xmerg_allc.tsv --samples EPI-175 EPI-176 EPI-181 EPI-182 EPI-184 EPI-185 EPI-187 EPI-188 EPI-193 EPI-194 EPI-199 EPI-200 EPI-205 EPI-206 EPI-208 EPI-209 EPI-214 EPI-215 EPI-220 EPI-221 EPI-226 EPI-227 EPI-229 EPI-230 --mc-type "CGN" --num-procs 8 --output-prefix day145_AllpH_DMR250bp_MCmax25_cov5x --mc-max-dist 25 --dmr-max-dist 250 --min-num-dms 3 --sample-category 0 0 1 1 1 1 2 2 0 0 2 2 3 3 4 4 5 5 5 5 3 3 4 4
Splitting allc files for chromosome Scaffold_12
Mon Dec 23 12:40:19 2019
Ran 12312 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_10_chunk_2.tsv
Ran 16245 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_10_chunk_3.tsv
Ran 6944 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_09_chunk_2.tsv
Ran 12839 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_10_chunk_6.tsv
Ran 18446 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_10_chunk_4.tsv
Ran 12124 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_10_chunk_7.tsv
Ran 18140 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_10_chunk_5.tsv
Ran 7346 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_11_chunk_1.tsv
Running rms tests for chromosome Scaffold_12
Mon Dec 23 12:43:46 2019
Splitting allc files for chromosome Scaffold_13
Mon Dec 23 12:43:46 2019
Ran 15126 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_11_chunk_0.tsv
Ran 13202 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_11_chunk_3.tsv
Ran 13883 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_11_chunk_2.tsv
Ran 12747 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_11_chunk_5.tsv
Ran 14591 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_11_chunk_7.tsv
Ran 16279 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_11_chunk_6.tsv
Ran 12940 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_12_chunk_2.tsv
Ran 12823 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_12_chunk_0.tsv
Running rms tests for chromosome Scaffold_13
Mon Dec 23 12:48:12 2019
Splitting allc files for chromosome Scaffold_14
Mon Dec 23 12:48:12 2019
Ran 16449 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_12_chunk_1.tsv
Ran 16090 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_12_chunk_3.tsv
Ran 8790 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_12_chunk_5.tsv
Ran 11013 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_11_chunk_4.tsv
Ran 14895 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_12_chunk_4.tsv
Ran 10277 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_13_chunk_1.tsv
Ran 20155 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_12_chunk_6.tsv
Ran 16506 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_12_chunk_7.tsv
Ran 14500 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_13_chunk_0.tsv
Ran 9314 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_13_chunk_2.tsv
Running rms tests for chromosome Scaffold_14
Mon Dec 23 12:51:39 2019
Splitting allc files for chromosome Scaffold_15
Mon Dec 23 12:51:39 2019
Ran 10455 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_13_chunk_3.tsv
Ran 11411 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_13_chunk_5.tsv
Ran 12529 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_13_chunk_4.tsv
Ran 12610 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_13_chunk_6.tsv
Ran 16778 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_13_chunk_7.tsv
Ran 12498 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_14_chunk_0.tsv
Running rms tests for chromosome Scaffold_15
Mon Dec 23 12:56:19 2019
Splitting allc files for chromosome Scaffold_16
Mon Dec 23 12:56:19 2019
Ran 14196 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_14_chunk_3.tsv
Ran 16567 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_14_chunk_1.tsv
Ran 16673 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_14_chunk_5.tsv
Ran 19902 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_14_chunk_4.tsv
Ran 13129 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_14_chunk_7.tsv
Ran 8674 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_15_chunk_2.tsv
Ran 13077 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_15_chunk_0.tsv
Ran 11777 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_15_chunk_1.tsv
Running rms tests for chromosome Scaffold_16
Mon Dec 23 13:00:36 2019
Splitting allc files for chromosome Scaffold_17
Mon Dec 23 13:00:36 2019
Ran 20153 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_14_chunk_6.tsv
Ran 10937 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_15_chunk_3.tsv
Ran 12485 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_15_chunk_4.tsv
Ran 10601 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_15_chunk_6.tsv
Ran 6318 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_16_chunk_1.tsv
Ran 10317 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_16_chunk_3.tsv
Ran 12431 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_15_chunk_5.tsv
Ran 11960 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_15_chunk_7.tsv
Running rms tests for chromosome Scaffold_17
Mon Dec 23 13:03:59 2019
Splitting allc files for chromosome Scaffold_18
Mon Dec 23 13:03:59 2019
Ran 7256 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_16_chunk_2.tsv
Ran 11838 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_16_chunk_4.tsv
Ran 8058 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_16_chunk_7.tsv
Ran 10905 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_16_chunk_5.tsv
Ran 8170 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_16_chunk_6.tsv
Ran 9046 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_17_chunk_1.tsv
Ran 12517 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_17_chunk_0.tsv
Ran 18227 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_14_chunk_2.tsv
Running rms tests for chromosome Scaffold_18
Mon Dec 23 13:07:49 2019
Ran 9736 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_17_chunk_2.tsv
Ran 10044 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_17_chunk_4.tsv
Ran 9029 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_17_chunk_5.tsv
Ran 13922 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_17_chunk_3.tsv
Ran 9210 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_17_chunk_7.tsv
Ran 9576 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_17_chunk_6.tsv
Ran 6174 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_18_chunk_1.tsv
Ran 10373 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_18_chunk_0.tsv
Ran 7212 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_18_chunk_3.tsv
Ran 7033 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_18_chunk_4.tsv
Ran 5251 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_18_chunk_5.tsv
Ran 8790 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_18_chunk_6.tsv
Ran 7481 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_18_chunk_7.tsv
Ran 6383 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_18_chunk_2.tsv
Ran 8941 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_Scaffold_16_chunk_0.tsv
Merging sorted day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results.tsv files.
Mon Dec 23 13:15:28 2019
Begin FDR Correction
Mon Dec 23 13:21:09 2019
m0 estimate for iteration 0: 2125699
Histogram FDR correction did not converge. Using the smallest p-value 0.0003333333333333333 as cutoff.
Calculating Residual Cutoff
Mon Dec 23 13:21:21 2019
Begin Defining Windows
Mon Dec 23 13:21:32 2019
Adding Methylation Levels
Mon Dec 23 13:23:02 2019
Done
Mon Dec 23 13:23:46 2019
bash-3.2$