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DESCRIPTION
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DESCRIPTION
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Package: csSAM
Type: Package
Title: csSAM - cell-specific Significance Analysis of Microarrays
Version: 1.4
Date: 2011-10-08
Authors@R: c( person("Shai", "Shen-Orr", role=c("aut", "cre"),
email="shenorr@technion.ac.il") , person("Rob", "Tibshirani", role="aut") ,
person("Narasimhan", "Balasubramanian", role="aut") , person("David",
"Wang", role="aut") , person("Renaud Gaujoux", role="ctb",
comment="roxygen/debug/CRAN-compliance") )
Maintainer: Shai Shen-Orr <shenorr@technion.ac.il>
Description: Cell-type specific differential expression of a microarray
experiment of heterogeneous tissue samples, using SAM.
License: LGPL
Encoding: UTF-8
LazyLoad: yes
Depends:
R (>= 2.15),
Rcpp
Collate:
'aaa-package.R'
'csfit.R'
'csSAM.R'
'csSAMfit.R'
'csstats.R'
'formula.R'
'csSamWrapper.R'
'fdrCsSAM.R'
'fdrSAM.R'
'findSigGene.R'
'make.monotone.R'
'plotCsSAM.R'
'runSAM.R'
'ttest.func.R'
'varr.R'
LinkingTo: Rcpp
Imports:
utils,
stats,
Formula,
methods,
rngtools,
pkgmaker (>= 0.26.5),
plyr,
ggplot2,
scales
Suggests: testthat,
Biobase,
xbioc
Remotes:
renozao/pkgmaker@develop,
renozao/xbioc
biocViews: DifferentialExpression, Regression
RoxygenNote: 6.0.0.9000
Roxygen: list(markdown = TRUE, namespace_unsorted = TRUE, roclets = c('collate', 'namespace', 'roclets::rd2_roclet'))