analyze_foldamers is a Python package for structural analysis of coarse-grained
oligomer molecular simulations.
- Identify native structures using RMSD or torsion-based clustering of trajectories
- Generate histograms of all bonded parameters (bonds, angles, torsions)
- Generate 2D histograms of any combination of bonded observables
- Determine helical parameters for folded oligomer structures
- Tools for automated rendering of molecular snapshots with VMD
.. toctree:: :maxdepth: 2 :caption: Getting started installation examples
.. toctree:: :maxdepth: 2 :caption: Bonded distributions bonded_distributions
.. toctree:: :maxdepth: 2 :caption: Clustering clustering
.. toctree:: :maxdepth: 2 :caption: Helical fitting helical
.. toctree:: :maxdepth: 2 :caption: Visualization visualization