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Features.i
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Features.i
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/*
* This software is distributed under BSD 3-clause license (see LICENSE file).
*
* Authors: Saloni Nigam, Sergey Lisitsyn
*/
#ifdef HAVE_PYTHON
%feature("autodoc", "get_str(self) -> numpy 1dim array of str\n\nUse this instead of get_string() which is not nicely wrapped") get_str;
%feature("autodoc", "get_hist(self) -> numpy 1dim array of int") get_hist;
%feature("autodoc", "get_fm(self) -> numpy 1dim array of int") get_fm;
%feature("autodoc", "get_fm(self) -> numpy 1dim array of float") get_fm;
%feature("autodoc", "get_fm(self) -> numpy 1dim array of float") get_fm;
%feature("autodoc", "get_labels(self) -> numpy 1dim array of float") get_labels;
#endif
/* These functions return new Objects */
%newobject get_transposed();
%newobject create_merged_copy(CFeatures* other);
%newobject copy_subset(SGVector<index_t> indices);
%newobject copy_dimension_subset(SGVector<index_t> indices);
%newobject get_streamed_features(index_t num_elements);
/* methods in the labels factory do a conversion only - but need to be ref'd for modular interfaces */
%newobject shogun::CLabelsFactory::to_binary(CLabels* base_labels);
%newobject shogun::CLabelsFactory::to_latent(CLabels* base_labels);
%newobject shogun::CLabelsFactory::to_multiclass(CLabels* base_labels);
%newobject shogun::CLabelsFactory::to_regression(CLabels* base_labels);
%newobject shogun::CLabelsFactory::to_structured(CLabels* base_labels);
%newobject shogun::CLabelsFactory::to_multilabel_output(CLabels* base_labels);
%newobject shogun::CLabelsFactory::to_multiclass_structured(CLabels* base_labels);
#if defined(USE_SWIG_DIRECTORS) && defined(SWIGPYTHON)
%feature("director") shogun::CDirectorDotFeatures;
%feature("director:except") {
if ($error != NULL) {
throw Swig::DirectorMethodException();
}
}
#endif
#ifndef SWIGPYTHON
#define PROTOCOLS_DENSEFEATURES(class_name, type_name, format_str, typecode)
#define PROTOCOLS_DENSELABELS(class_type, class_name, type_name, format_str, typecode)
#define EXTEND_DENSEFEATURES(class_name, type_name, typecode)
#endif
/* Remove C Prefix */
%rename(Alphabet) CAlphabet;
%rename(Features) CFeatures;
%rename(StreamingFeatures) CStreamingFeatures;
%rename(DotFeatures) CDotFeatures;
%rename(DirectorDotFeatures) CDirectorDotFeatures;
%rename(BinnedDotFeatures) CBinnedDotFeatures;
%rename(StreamingDotFeatures) CStreamingDotFeatures;
%rename(DummyFeatures) CDummyFeatures;
%rename(IndexFeatures) CIndexFeatures;
%rename(AttributeFeatures) CAttributeFeatures;
%rename(CombinedFeatures) CCombinedFeatures;
%rename(CombinedDotFeatures) CCombinedDotFeatures;
%rename(HashedDocDotFeatures) CHashedDocDotFeatures;
%rename(StreamingHashedDocDotFeatures) CStreamingHashedDocDotFeatures;
%rename(RandomKitchenSinksDotFeatures) CRandomKitchenSinksDotFeatures;
%rename(RandomFourierDotFeatures) CRandomFourierDotFeatures;
%rename(Labels) CLabels;
%rename(LabelsFactory) CLabelsFactory;
PROTOCOLS_DENSELABELS(CDenseLabels, DenseLabels, float64_t, "d\0", NPY_FLOAT64)
%rename(DenseLabels) CDenseLabels;
PROTOCOLS_DENSELABELS(CBinaryLabels, BinaryLabels, float64_t, "d\0", NPY_FLOAT64)
%rename(BinaryLabels) CBinaryLabels;
PROTOCOLS_DENSELABELS(CMulticlassLabels, MulticlassLabels, float64_t, "d\0", NPY_FLOAT64)
%rename(MulticlassLabels) CMulticlassLabels;
PROTOCOLS_DENSELABELS(CRegressionLabels, RegressionLabels, float64_t, "d\0", NPY_FLOAT64)
%rename(RegressionLabels) CRegressionLabels;
%rename(StructuredLabels) CStructuredLabels;
%rename(LatentLabels) CLatentLabels;
%rename(MultilabelLabels) CMultilabelLabels;
%rename(RealFileFeatures) CRealFileFeatures;
%rename(FKFeatures) CFKFeatures;
%rename(TOPFeatures) CTOPFeatures;
%rename(SNPFeatures) CSNPFeatures;
%rename(WDFeatures) CWDFeatures;
%rename(HashedWDFeatures) CHashedWDFeatures;
%rename(HashedWDFeaturesTransposed) CHashedWDFeaturesTransposed;
%rename(PolyFeatures) CPolyFeatures;
%rename(SparsePolyFeatures) CSparsePolyFeatures;
%rename(LBPPyrDotFeatures) CLBPPyrDotFeatures;
%rename(ExplicitSpecFeatures) CExplicitSpecFeatures;
%rename(ImplicitWeightedSpecFeatures) CImplicitWeightedSpecFeatures;
%rename(DataGenerator) CDataGenerator;
%rename(LatentFeatures) CLatentFeatures;
/* Include Class Headers to make them visible from within the target language */
%include <shogun/features/FeatureTypes.h>
%include <shogun/features/Alphabet.h>
%include <shogun/lib/Compressor.h>
%include <shogun/features/Features.h>
%include <shogun/features/DotFeatures.h>
%include <shogun/features/DirectorDotFeatures.h>
%include <shogun/features/BinnedDotFeatures.h>
%include <shogun/features/streaming/StreamingFeatures.h>
%include <shogun/features/streaming/StreamingDotFeatures.h>
%include <shogun/features/DataGenerator.h>
/* Templated Class StringFeatures */
%include <shogun/features/StringFeatures.h>
namespace shogun
{
#ifdef USE_BOOL
%template(StringBoolFeatures) CStringFeatures<bool>;
#endif
#ifdef USE_CHAR
%template(StringCharFeatures) CStringFeatures<char>;
#endif
#ifdef USE_UINT8
%template(StringByteFeatures) CStringFeatures<uint8_t>;
#endif
#ifdef USE_INT16
%template(StringShortFeatures) CStringFeatures<int16_t>;
#endif
#ifdef USE_UINT16
%template(StringWordFeatures) CStringFeatures<uint16_t>;
#endif
#ifdef USE_INT32
%template(StringIntFeatures) CStringFeatures<int32_t>;
#endif
#ifdef USE_UINT32
%template(StringUIntFeatures) CStringFeatures<uint32_t>;
#endif
#ifdef USE_INT64
%template(StringLongFeatures) CStringFeatures<int64_t>;
#endif
#ifdef USE_UINT64
%template(StringUlongFeatures) CStringFeatures<uint64_t>;
#endif
#ifdef USE_FLOAT32
%template(StringShortRealFeatures) CStringFeatures<float32_t>;
#endif
#ifdef USE_FLOAT64
%template(StringRealFeatures) CStringFeatures<float64_t>;
#endif
#ifdef USE_FLOATMAX
%template(StringLongRealFeatures) CStringFeatures<floatmax_t>;
#endif
}
/* Templated Class StreamingStringFeatures */
%include <shogun/features/streaming/StreamingStringFeatures.h>
namespace shogun
{
#ifdef USE_BOOL
%template(StreamingStringBoolFeatures) CStreamingStringFeatures<bool>;
#endif
#ifdef USE_CHAR
%template(StreamingStringCharFeatures) CStreamingStringFeatures<char>;
#endif
#ifdef USE_UINT8
%template(StreamingStringByteFeatures) CStreamingStringFeatures<uint8_t>;
#endif
#ifdef USE_INT16
%template(StreamingStringShortFeatures) CStreamingStringFeatures<int16_t>;
#endif
#ifdef USE_UINT16
%template(StreamingStringWordFeatures) CStreamingStringFeatures<uint16_t>;
#endif
#ifdef USE_INT32
%template(StreamingStringIntFeatures) CStreamingStringFeatures<int32_t>;
#endif
#ifdef USE_UINT32
%template(StreamingStringUIntFeatures) CStreamingStringFeatures<uint32_t>;
#endif
#ifdef USE_INT64
%template(StreamingStringLongFeatures) CStreamingStringFeatures<int64_t>;
#endif
#ifdef USE_UINT64
%template(StreamingStringUlongFeatures) CStreamingStringFeatures<uint64_t>;
#endif
#ifdef USE_FLOAT32
%template(StreamingStringShortRealFeatures) CStreamingStringFeatures<float32_t>;
#endif
#ifdef USE_FLOAT64
%template(StreamingStringRealFeatures) CStreamingStringFeatures<float64_t>;
#endif
#ifdef USE_FLOATMAX
%template(StreamingStringLongRealFeatures) CStreamingStringFeatures<floatmax_t>;
#endif
}
/* Templated Class StringFileFeatures */
%include <shogun/features/StringFileFeatures.h>
namespace shogun
{
#ifdef USE_BOOL
%template(StringFileBoolFeatures) CStringFileFeatures<bool>;
#endif
#ifdef USE_CHAR
%template(StringFileCharFeatures) CStringFileFeatures<char>;
#endif
#ifdef USE_UINT8
%template(StringFileByteFeatures) CStringFileFeatures<uint8_t>;
#endif
#ifdef USE_INT16
%template(StringFileShortFeatures) CStringFileFeatures<int16_t>;
#endif
#ifdef USE_UINT16
%template(StringFileWordFeatures) CStringFileFeatures<uint16_t>;
#endif
#ifdef USE_INT32
%template(StringFileIntFeatures) CStringFileFeatures<int32_t>;
#endif
#ifdef USE_UINT32
%template(StringFileUIntFeatures) CStringFileFeatures<uint32_t>;
#endif
#ifdef USE_INT64
%template(StringFileLongFeatures) CStringFileFeatures<int64_t>;
#endif
#ifdef USE_UINT64
%template(StringFileUlongFeatures) CStringFileFeatures<uint64_t>;
#endif
#ifdef USE_FLOAT32
%template(StringFileShortRealFeatures) CStringFileFeatures<float32_t>;
#endif
#ifdef USE_FLOAT64
%template(StringFileRealFeatures) CStringFileFeatures<float64_t>;
#endif
#ifdef USE_FLOATMAX
%template(StringFileLongRealFeatures) CStringFileFeatures<floatmax_t>;
#endif
}
/* Templated Class SparseFeatures */
%include <shogun/features/SparseFeatures.h>
namespace shogun
{
#ifdef USE_BOOL
%template(SparseBoolFeatures) CSparseFeatures<bool>;
#endif
#ifdef USE_CHAR
%template(SparseCharFeatures) CSparseFeatures<char>;
#endif
#ifdef USE_UINT8
%template(SparseByteFeatures) CSparseFeatures<uint8_t>;
#endif
#ifdef USE_INT16
%template(SparseShortFeatures) CSparseFeatures<int16_t>;
#endif
#ifdef USE_UINT16
%template(SparseWordFeatures) CSparseFeatures<uint16_t>;
#endif
#ifdef USE_INT32
%template(SparseIntFeatures) CSparseFeatures<int32_t>;
#endif
#ifdef USE_UINT32
%template(SparseUIntFeatures) CSparseFeatures<uint32_t>;
#endif
#ifdef USE_INT64
%template(SparseLongFeatures) CSparseFeatures<int64_t>;
#endif
#ifdef USE_UINT64
%template(SparseUlongFeatures) CSparseFeatures<uint64_t>;
#endif
#ifdef USE_FLOAT32
%template(SparseShortRealFeatures) CSparseFeatures<float32_t>;
#endif
#ifdef USE_FLOAT64
%template(SparseRealFeatures) CSparseFeatures<float64_t>;
#endif
#ifdef USE_FLOATMAX
%template(SparseLongRealFeatures) CSparseFeatures<floatmax_t>;
#endif
}
/* Templated Class StreamingSparseFeatures */
%include <shogun/features/streaming/StreamingSparseFeatures.h>
namespace shogun
{
#ifdef USE_BOOL
%template(StreamingSparseBoolFeatures) CStreamingSparseFeatures<bool>;
#endif
#ifdef USE_CHAR
%template(StreamingSparseCharFeatures) CStreamingSparseFeatures<char>;
#endif
#ifdef USE_UINT8
%template(StreamingSparseByteFeatures) CStreamingSparseFeatures<uint8_t>;
#endif
#ifdef USE_INT16
%template(StreamingSparseShortFeatures) CStreamingSparseFeatures<int16_t>;
#endif
#ifdef USE_UINT16
%template(StreamingSparseWordFeatures) CStreamingSparseFeatures<uint16_t>;
#endif
#ifdef USE_INT32
%template(StreamingSparseIntFeatures) CStreamingSparseFeatures<int32_t>;
#endif
#ifdef USE_UINT32
%template(StreamingSparseUIntFeatures) CStreamingSparseFeatures<uint32_t>;
#endif
#ifdef USE_INT64
%template(StreamingSparseLongFeatures) CStreamingSparseFeatures<int64_t>;
#endif
#ifdef USE_UINT64
%template(StreamingSparseUlongFeatures) CStreamingSparseFeatures<uint64_t>;
#endif
#ifdef USE_FLOAT32
%template(StreamingSparseShortRealFeatures) CStreamingSparseFeatures<float32_t>;
#endif
#ifdef USE_FLOAT64
%template(StreamingSparseRealFeatures) CStreamingSparseFeatures<float64_t>;
#endif
#ifdef USE_FLOATMAX
%template(StreamingSparseLongRealFeatures) CStreamingSparseFeatures<floatmax_t>;
#endif
}
/* Templated Class DenseFeatures */
%include <shogun/features/DenseFeatures.h>
namespace shogun
{
#ifdef USE_BOOL
// something wrong with git
PROTOCOLS_DENSEFEATURES(BoolFeatures, bool, "?\0", NPY_BOOL)
%template(BoolFeatures) CDenseFeatures<bool>;
EXTEND_DENSEFEATURES(BoolFeatures, bool, NPY_BOOL)
#endif
#ifdef USE_CHAR
PROTOCOLS_DENSEFEATURES(CharFeatures, char, "c\0", NPY_STRING)
%template(CharFeatures) CDenseFeatures<char>;
EXTEND_DENSEFEATURES(CharFeatures, char, NPY_STRING)
#endif
#ifdef USE_UINT8
PROTOCOLS_DENSEFEATURES(ByteFeatures, uint8_t, "B\0", NPY_UINT8)
%template(ByteFeatures) CDenseFeatures<uint8_t>;
EXTEND_DENSEFEATURES(ByteFeatures, uint8_t, NPY_UINT8)
#endif
#ifdef USE_UINT16
PROTOCOLS_DENSEFEATURES(WordFeatures, uint16_t, "H\0", NPY_UINT16)
%template(WordFeatures) CDenseFeatures<uint16_t>;
EXTEND_DENSEFEATURES(WordFeatures, uint16_t, NPY_UINT16)
#endif
#ifdef USE_INT16
PROTOCOLS_DENSEFEATURES(ShortFeatures, int16_t, "h\0", NPY_INT16)
%template(ShortFeatures) CDenseFeatures<int16_t>;
EXTEND_DENSEFEATURES(ShortFeatures, int16_t, NPY_INT16)
#endif
#ifdef USE_INT32
PROTOCOLS_DENSEFEATURES(IntFeatures, int32_t, "i\0", NPY_INT32)
%template(IntFeatures) CDenseFeatures<int32_t>;
EXTEND_DENSEFEATURES(IntFeatures, int32_t, NPY_INT32)
#endif
#ifdef USE_UINT32
PROTOCOLS_DENSEFEATURES(UIntFeatures, uint32_t, "I\0", NPY_UINT32)
%template(UIntFeatures) CDenseFeatures<uint32_t>;
EXTEND_DENSEFEATURES(UIntFeatures, uint32_t, NPY_UINT32)
#endif
#ifdef USE_INT64
PROTOCOLS_DENSEFEATURES(LongIntFeatures, int64_t, "l\0", NPY_INT64)
%template(LongIntFeatures) CDenseFeatures<int64_t>;
EXTEND_DENSEFEATURES(LongIntFeatures, int64_t, NPY_INT64)
#endif
#ifdef USE_UINT64
PROTOCOLS_DENSEFEATURES(ULongIntFeatures, uint64_t, "L\0", NPY_UINT64)
%template(ULongIntFeatures) CDenseFeatures<uint64_t>;
EXTEND_DENSEFEATURES(ULongIntFeatures, uint64_t, NPY_UINT64)
#endif
#ifdef USE_FLOATMAX
%template(LongRealFeatures) CDenseFeatures<floatmax_t>;
#endif
#ifdef USE_FLOAT32
PROTOCOLS_DENSEFEATURES(ShortRealFeatures, float32_t, "f\0", NPY_FLOAT32)
%template(ShortRealFeatures) CDenseFeatures<float32_t>;
EXTEND_DENSEFEATURES(ShortRealFeatures, float32_t, NPY_FLOAT32)
#endif
#ifdef USE_FLOAT64
PROTOCOLS_DENSEFEATURES(RealFeatures, float64_t, "d\0", NPY_FLOAT64)
%template(RealFeatures) CDenseFeatures<float64_t>;
EXTEND_DENSEFEATURES(RealFeatures, float64_t, NPY_FLOAT64)
#endif
}
/* Templated Class StreamingDenseFeatures */
%include <shogun/features/streaming/StreamingDenseFeatures.h>
namespace shogun
{
#ifdef USE_BOOL
%template(StreamingBoolFeatures) CStreamingDenseFeatures<bool>;
#endif
#ifdef USE_CHAR
%template(StreamingCharFeatures) CStreamingDenseFeatures<char>;
#endif
#ifdef USE_UINT8
%template(StreamingByteFeatures) CStreamingDenseFeatures<uint8_t>;
#endif
#ifdef USE_UINT16
%template(StreamingWordFeatures) CStreamingDenseFeatures<uint16_t>;
#endif
#ifdef USE_INT16
%template(StreamingShortFeatures) CStreamingDenseFeatures<int16_t>;
#endif
#ifdef USE_INT32
%template(StreamingIntFeatures) CStreamingDenseFeatures<int32_t>;
#endif
#ifdef USE_UINT32
%template(StreamingUIntFeatures) CStreamingDenseFeatures<uint32_t>;
#endif
#ifdef USE_INT64
%template(StreamingLongIntFeatures) CStreamingDenseFeatures<int64_t>;
#endif
#ifdef USE_UINT64
%template(StreamingULongIntFeatures) CStreamingDenseFeatures<uint64_t>;
#endif
#ifdef USE_FLOATMAX
%template(StreamingLongRealFeatures) CStreamingDenseFeatures<floatmax_t>;
#endif
#ifdef USE_FLOAT32
%template(StreamingShortRealFeatures) CStreamingDenseFeatures<float32_t>;
#endif
#ifdef USE_FLOAT64
%template(StreamingRealFeatures) CStreamingDenseFeatures<float64_t>;
#endif
}
/* these classes need the above typed CFeature definitions */
%rename(MeanShiftDataGenerator) CMeanShiftDataGenerator;
%include <shogun/features/streaming/generators/MeanShiftDataGenerator.h>
%rename(GaussianBlobsDataGenerator) CGaussianBlobsDataGenerator;
%include <shogun/features/streaming/generators/GaussianBlobsDataGenerator.h>
/* Templated Class DenseSubsetFeatures */
%include <shogun/features/DenseSubsetFeatures.h>
namespace shogun
{
#ifdef USE_BOOL
%template(BoolSubsetFeatures) CDenseSubsetFeatures<bool>;
#endif
#ifdef USE_CHAR
%template(CharSubsetFeatures) CDenseSubsetFeatures<char>;
#endif
#ifdef USE_UINT8
%template(ByteSubsetFeatures) CDenseSubsetFeatures<uint8_t>;
#endif
#ifdef USE_UINT16
%template(WordSubsetFeatures) CDenseSubsetFeatures<uint16_t>;
#endif
#ifdef USE_INT16
%template(ShortSubsetFeatures) CDenseSubsetFeatures<int16_t>;
#endif
#ifdef USE_INT32
%template(IntSubsetFeatures) CDenseSubsetFeatures<int32_t>;
#endif
#ifdef USE_UINT32
%template(UIntSubsetFeatures) CDenseSubsetFeatures<uint32_t>;
#endif
#ifdef USE_INT64
%template(LongIntSubsetFeatures) CDenseSubsetFeatures<int64_t>;
#endif
#ifdef USE_UINT64
%template(ULongIntSubsetFeatures) CDenseSubsetFeatures<uint64_t>;
#endif
#ifdef USE_FLOATMAX
%template(LongRealSubsetFeatures) CDenseSubsetFeatures<floatmax_t>;
#endif
#ifdef USE_FLOAT32
%template(ShortRealSubsetFeatures) CDenseSubsetFeatures<float32_t>;
#endif
#ifdef USE_FLOAT64
%template(RealSubsetFeatures) CDenseSubsetFeatures<float64_t>;
#endif
}
%include <shogun/features/DummyFeatures.h>
%include <shogun/features/IndexFeatures.h>
%include <shogun/features/AttributeFeatures.h>
%include <shogun/features/CombinedFeatures.h>
%include <shogun/features/CombinedDotFeatures.h>
%include <shogun/features/hashed/HashedDocDotFeatures.h>
%include <shogun/features/streaming/StreamingHashedDocDotFeatures.h>
%include <shogun/features/RandomKitchenSinksDotFeatures.h>
%include <shogun/features/RandomFourierDotFeatures.h>
%include <shogun/labels/Labels.h>
%include <shogun/labels/LabelsFactory.h>
%include <shogun/labels/DenseLabels.h>
%include <shogun/labels/BinaryLabels.h>
%include <shogun/labels/LatentLabels.h>
%include <shogun/labels/MulticlassLabels.h>
%include <shogun/labels/RegressionLabels.h>
%include <shogun/labels/StructuredLabels.h>
%include <shogun/labels/MultilabelLabels.h>
%include <shogun/features/RealFileFeatures.h>
%include <shogun/features/FKFeatures.h>
%include <shogun/features/TOPFeatures.h>
%include <shogun/features/SNPFeatures.h>
%include <shogun/features/WDFeatures.h>
%include <shogun/features/hashed/HashedWDFeatures.h>
%include <shogun/features/hashed/HashedWDFeaturesTransposed.h>
%include <shogun/features/PolyFeatures.h>
%include <shogun/features/SparsePolyFeatures.h>
%include <shogun/features/LBPPyrDotFeatures.h>
%include <shogun/features/ExplicitSpecFeatures.h>
%include <shogun/features/ImplicitWeightedSpecFeatures.h>
%include <shogun/features/LatentFeatures.h>
%include <shogun/features/MatrixFeatures.h>
/* Templated Class MatrixFeatures */
%include <shogun/features/MatrixFeatures.h>
namespace shogun
{
#ifdef USE_BOOL
%template(BoolMatrixFeatures) CMatrixFeatures<bool>;
#endif
#ifdef USE_CHAR
%template(CharMatrixFeatures) CMatrixFeatures<char>;
#endif
#ifdef USE_UINT8
%template(ByteMatrixFeatures) CMatrixFeatures<uint8_t>;
#endif
#ifdef USE_UINT16
%template(WordMatrixFeatures) CMatrixFeatures<uint16_t>;
#endif
#ifdef USE_INT16
%template(ShortMatrixFeatures) CMatrixFeatures<int16_t>;
#endif
#ifdef USE_INT32
%template(IntMatrixFeatures) CMatrixFeatures<int32_t>;
#endif
#ifdef USE_UINT32
%template(UIntMatrixFeatures) CMatrixFeatures<uint32_t>;
#endif
#ifdef USE_INT64
%template(LongIntMatrixFeatures) CMatrixFeatures<int64_t>;
#endif
#ifdef USE_UINT64
%template(ULongIntMatrixFeatures) CMatrixFeatures<uint64_t>;
#endif
#ifdef USE_FLOATMAX
%template(LongRealMatrixFeatures) CMatrixFeatures<floatmax_t>;
#endif
#ifdef USE_FLOAT32
%template(ShortRealMatrixFeatures) CMatrixFeatures<float32_t>;
#endif
#ifdef USE_FLOAT64
%template(RealMatrixFeatures) CMatrixFeatures<float64_t>;
#endif
}