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DataFetcher.cpp
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DataFetcher.cpp
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/*
* Restructuring Shogun's statistical hypothesis testing framework.
* Copyright (C) 2016 Soumyajit De
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http:/www.gnu.org/licenses/>.
*/
#include <algorithm>
#include <shogun/features/Features.h>
#include <shogun/statistical_testing/internals/DataFetcher.h>
#include <shogun/statistical_testing/internals/FeaturesUtil.h>
using namespace shogun;
using namespace internal;
DataFetcher::DataFetcher() : m_num_samples(0), m_samples(nullptr),
train_test_subset_used(false)
{
}
DataFetcher::DataFetcher(CFeatures* samples) : m_samples(samples),
train_test_subset_used(false)
{
REQUIRE(m_samples!=nullptr, "Samples cannot be null!\n");
SG_REF(m_samples);
m_num_samples=m_samples->get_num_vectors();
m_train_test_details.set_total_num_samples(m_num_samples);
}
DataFetcher::~DataFetcher()
{
end();
SG_UNREF(m_samples);
}
const char* DataFetcher::get_name() const
{
return "DataFetcher";
}
void DataFetcher::set_train_test_ratio(float64_t train_test_ratio)
{
m_num_samples=m_train_test_details.get_total_num_samples();
REQUIRE(m_num_samples>0, "Number of samples is not set!\n");
index_t num_training_samples=m_num_samples*train_test_ratio/(train_test_ratio+1);
m_train_test_details.set_num_training_samples(num_training_samples);
SG_SINFO("Must set the train/test mode by calling set_train_mode(True/False)!\n");
}
float64_t DataFetcher::get_train_test_ratio() const
{
return float64_t(m_train_test_details.get_num_training_samples())/m_train_test_details.get_num_test_samples();
}
void DataFetcher::set_train_mode(bool train_mode)
{
m_train_test_details.train_mode=train_mode;
// TODO put the following in another methods
index_t start_index=0;
if (m_train_test_details.train_mode)
{
m_num_samples=m_train_test_details.get_num_training_samples();
if (m_num_samples==0)
SG_SERROR("The number of training samples is 0! Please set a valid train-test ratio\n");
SG_SINFO("Using %d number of samples for training!\n", m_num_samples);
}
else
{
m_num_samples=m_train_test_details.get_num_test_samples();
SG_SINFO("Using %d number of samples for testing!\n", m_num_samples);
start_index=m_train_test_details.get_num_training_samples();
if (start_index==0)
{
if (train_test_subset_used)
{
m_samples->remove_subset();
train_test_subset_used=false;
}
return;
}
}
SGVector<index_t> inds(m_num_samples);
std::iota(inds.data(), inds.data()+inds.size(), start_index);
if (train_test_subset_used)
m_samples->remove_subset();
m_samples->add_subset(inds);
train_test_subset_used=true;
}
void DataFetcher::set_xvalidation_mode(bool xvalidation_mode)
{
// using fetcher_type=std::unique_ptr<DataFetcher>;
// std::for_each(fetchers.begin(), fetchers.end(), [&train_mode](fetcher_type& f)
// {
// f->set_xvalidation_mode(xvalidation_mode);
// });
}
index_t DataFetcher::get_num_folds() const
{
return 1+ceil(get_train_test_ratio());
}
void DataFetcher::use_fold(index_t idx)
{
auto num_folds=get_num_folds();
REQUIRE(idx>=0, "The index (%d) has to be between 0 and %d, both inclusive!\n", idx, num_folds-1);
REQUIRE(idx<num_folds, "The index (%d) has to be between 0 and %d, both inclusive!\n", idx, num_folds-1);
auto num_per_fold=m_train_test_details.get_total_num_samples()/num_folds;
if (train_test_subset_used)
m_samples->remove_subset();
SGVector<index_t> inds;
auto start_idx=idx*num_per_fold;
auto num_samples=0;
if (m_train_test_details.train_mode)
{
num_samples=m_train_test_details.get_num_training_samples();
inds=SGVector<index_t>(num_samples);
std::iota(inds.data(), inds.data()+inds.size(), 0);
if (start_idx<inds.size())
{
std::for_each(inds.data()+start_idx, inds.data()+inds.size(), [&num_per_fold](index_t& val)
{
val+=num_per_fold;
});
}
}
else
{
num_samples=m_train_test_details.get_num_test_samples();
inds=SGVector<index_t>(num_samples);
std::iota(inds.data(), inds.data()+inds.size(), start_idx);
m_samples->add_subset(inds);
}
inds.display_vector("inds");
m_samples->add_subset(inds);
}
void DataFetcher::set_blockwise(bool blockwise)
{
if (blockwise)
{
m_block_details=last_blockwise_details;
SG_SDEBUG("Restoring the blockwise details!\n");
m_block_details.m_full_data=false;
}
else
{
last_blockwise_details=m_block_details;
SG_SDEBUG("Saving the blockwise details!\n");
m_block_details=BlockwiseDetails();
}
}
void DataFetcher::start()
{
REQUIRE(m_num_samples>0, "Number of samples is 0!\n");
if (m_block_details.m_full_data || m_block_details.m_blocksize>m_num_samples)
{
SG_SINFO("Fetching entire data (%d samples)!\n", m_num_samples);
m_block_details.with_blocksize(m_num_samples);
}
m_block_details.m_total_num_blocks=m_num_samples/m_block_details.m_blocksize;
reset();
}
CFeatures* DataFetcher::next()
{
CFeatures* next_samples=nullptr;
// figure out how many samples to fetch in this burst
auto num_already_fetched=m_block_details.m_next_block_index*m_block_details.m_blocksize;
auto num_more_samples=m_num_samples-num_already_fetched;
if (num_more_samples>0)
{
auto num_samples_this_burst=std::min(m_block_details.m_max_num_samples_per_burst, num_more_samples);
// create a shallow copy and add proper index subset
next_samples=FeaturesUtil::create_shallow_copy(m_samples);
SGVector<index_t> inds(num_samples_this_burst);
std::iota(inds.vector, inds.vector+inds.vlen, num_already_fetched);
next_samples->add_subset(inds);
m_block_details.m_next_block_index+=m_block_details.m_num_blocks_per_burst;
}
return next_samples;
}
void DataFetcher::reset()
{
m_block_details.m_next_block_index=0;
}
void DataFetcher::end()
{
}
const index_t DataFetcher::get_num_samples() const
{
return m_num_samples;
}
BlockwiseDetails& DataFetcher::fetch_blockwise()
{
m_block_details.m_full_data=false;
return m_block_details;
}