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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(ConnectProfile)
export(CreateNichConObject)
export(CreateObject_fromSeurat)
export(LR2TF)
export(LRT.Dimplot)
export(TransCommuProfile)
export(ViewInterCircos)
export(getForBubble)
export(getGSEAplot)
export(getHyperPathway)
export(plotBubble)
export(ridgeplot.DIY)
export(sankey_graph)
export(trans2tripleScore)
export(viewPheatmap)
exportClasses(CellInter)
import(graphics)
import(methods)
importFrom(ComplexHeatmap,Legend)
importFrom(ComplexHeatmap,draw)
importFrom(ComplexHeatmap,packLegend)
importFrom(DOSE,geneInCategory)
importFrom(DOSE,theme_dose)
importFrom(RColorBrewer,brewer.pal)
importFrom(Seurat,GetAssayData)
importFrom(circlize,circos.clear)
importFrom(circlize,circos.initialize)
importFrom(circlize,circos.link)
importFrom(circlize,circos.par)
importFrom(circlize,circos.trackPlotRegion)
importFrom(circlize,colorRamp2)
importFrom(circlize,get.cell.meta.data)
importFrom(circlize,highlight.sector)
importFrom(circlize,rand_color)
importFrom(clusterProfiler,GSEA)
importFrom(dplyr,arrange)
importFrom(dplyr,desc)
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,inner_join)
importFrom(enrichplot,plot_grid)
importFrom(ggalluvial,StatStratum)
importFrom(ggalluvial,geom_flow)
importFrom(ggalluvial,geom_stratum)
importFrom(ggalluvial,to_lodes_form)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,after_stat)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_linerange)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_rect)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_colorbar)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,margin)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_colour_gradientn)
importFrom(ggplot2,scale_fill_continuous)
importFrom(ggplot2,scale_fill_gradientn)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_size)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,unit)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggrepel,geom_text_repel)
importFrom(ggridges,geom_density_ridges)
importFrom(grDevices,colorRampPalette)
importFrom(graphics,par)
importFrom(graphics,plot.new)
importFrom(grid,gpar)
importFrom(grid,pushViewport)
importFrom(grid,unit)
importFrom(grid,upViewport)
importFrom(grid,viewport)
importFrom(gridBase,gridOMI)
importFrom(jsonlite,toJSON)
importFrom(magrittr,"%>%")
importFrom(magrittr,set_colnames)
importFrom(networkD3,JS)
importFrom(networkD3,sankeyNetwork)
importFrom(networkD3,saveNetwork)
importFrom(pheatmap,pheatmap)
importFrom(psych,corr.test)
importFrom(reshape2,melt)
importFrom(stats,aggregate)
importFrom(stats,median)
importFrom(stats,phyper)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(stringr,str_split)
importFrom(tidyr,pivot_longer)
importFrom(utils,head)
importFrom(utils,read.table)