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ashwellthorpe_AT1_vs_tgac1_selected.vcf
305 lines (305 loc) · 38.7 KB
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ashwellthorpe_AT1_vs_tgac1_selected.vcf
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Cf746836_TGAC_s1v1_contig_32 752 . G A,T 48 . DP=12;AF1=1;AC1=2;DP4=0,0,5,6;MQ=42;FQ=-51 PL 93,36,12,80,0,70
Cf746836_TGAC_s1v1_contig_56 12493 . G C,A 210 . DP=208;AF1=1;AC1=2;DP4=0,1,75,122;MQ=60;FQ=-282;PV4=1,0.49,0.47,0.17 PL 243,255,0,239,255,237
Cf746836_TGAC_s1v1_contig_65 696 . A C,T 159 . DP=64;AF1=1;AC1=2;DP4=0,0,34,24;MQ=60;FQ=-199 PL 192,172,0,173,135,170
Cf746836_TGAC_s1v1_contig_65 7113 . C G,A 117 . DP=27;AF1=1;AC1=2;DP4=0,0,17,8;MQ=60;FQ=-99 PL 150,72,0,144,53,141
Cf746836_TGAC_s1v1_contig_65 8590 . G A,C 160 . DP=82;AF1=1;AC1=2;DP4=0,0,39,35;MQ=60;FQ=-247 PL 193,220,0,194,202,191
Cf746836_TGAC_s1v1_contig_65 9245 . A G,T 156 . DP=69;AF1=1;AC1=2;DP4=0,0,31,35;MQ=60;FQ=-223 PL 189,196,0,181,170,178
Cf746836_TGAC_s1v1_contig_65 10726 . A G,T 186 . DP=95;AF1=1;AC1=2;DP4=0,0,49,38;MQ=60;FQ=-282 PL 219,255,0,209,229,206
Cf746836_TGAC_s1v1_contig_112 13405 . C A,T 124 . DP=38;AF1=1;AC1=2;DP4=0,0,8,14;MQ=60;FQ=-90 PL 157,63,0,155,48,152
Cf746836_TGAC_s1v1_contig_130 26232 . A G,T 207 . DP=52;AF1=1;AC1=2;DP4=0,0,14,36;MQ=60;FQ=-175 PL 240,148,0,230,120,227
Cf746836_TGAC_s1v1_contig_135 39350 . C T,G 170 . DP=29;AF1=1;AC1=2;DP4=0,0,18,9;MQ=60;FQ=-105 PL 203,78,0,202,62,199
Cf746836_TGAC_s1v1_contig_136 4724 . A G,C 135 . DP=85;AF1=1;AC1=2;DP4=0,0,34,47;MQ=60;FQ=-268 PL 168,241,0,168,222,165
Cf746836_TGAC_s1v1_contig_136 6452 . T G,A 135 . DP=28;AF1=1;AC1=2;DP4=0,0,15,12;MQ=60;FQ=-105 PL 168,78,0,168,65,165
Cf746836_TGAC_s1v1_contig_136 15529 . G A,C 192 . DP=2669;AF1=1;AC1=2;DP4=0,0,1201,293;MQ=60;FQ=-282 PL 225,255,0,226,255,223
Cf746836_TGAC_s1v1_contig_136 17855 . A G,T 173 . DP=93;AF1=1;AC1=2;DP4=0,0,55,31;MQ=60;FQ=-282 PL 206,255,0,206,237,203
Cf746836_TGAC_s1v1_contig_179 2123 . A G,T 54 . DP=143;AF1=1;AC1=2;DP4=0,0,0,38;MQ=60;FQ=-138 PL 87,111,0,87,96,84
Cf746836_TGAC_s1v1_contig_184 2488 . A C,T 54.3 . DP=3419;AF1=1;AC1=2;DP4=1,0,9,2;MQ=60;FQ=-42;PV4=1,0.44,1,0.099 PL 87,15,0,78,11,83
Cf746836_TGAC_s1v1_contig_192 1391 . T C,G 172 . DP=151;AF1=1;AC1=2;DP4=0,0,48,91;MQ=60;FQ=-282 PL 205,255,0,207,255,204
Cf746836_TGAC_s1v1_contig_192 1977 . C G,A 222 . DP=110;AF1=1;AC1=2;DP4=0,0,39,66;MQ=60;FQ=-282 PL 255,255,0,243,255,240
Cf746836_TGAC_s1v1_contig_192 2128 . ATTTTT ATTTTTT,ATTTTTTT 120 . INDEL;DP=65;AF1=1;AC1=2;DP4=0,0,4,48;MQ=60;FQ=-179 PL 161,144,0,96,25,84
Cf746836_TGAC_s1v1_contig_192 2206 . C T,G 132 . DP=28;AF1=1;AC1=2;DP4=0,0,1,21;MQ=60;FQ=-90 PL 165,63,0,166,51,163
Cf746836_TGAC_s1v1_contig_192 4917 . C T,A 221 . DP=154;AF1=1;AC1=2;DP4=0,0,82,63;MQ=60;FQ=-282 PL 254,255,0,254,255,251
Cf746836_TGAC_s1v1_contig_201 11173 . T G,C 74 . DP=15;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-63 PL 107,36,0,101,19,98
Cf746836_TGAC_s1v1_contig_207 1287 . A T,C 162 . DP=99;AF1=1;AC1=2;DP4=0,0,35,60;MQ=60;FQ=-282 PL 195,255,0,197,255,194
Cf746836_TGAC_s1v1_contig_235 2974 . A G,C 117 . DP=33;AF1=1;AC1=2;DP4=0,0,5,27;MQ=59;FQ=-120 PL 150,93,0,149,78,146
Cf746836_TGAC_s1v1_contig_248 6132 . T C,A 166 . DP=29;AF1=1;AC1=2;DP4=0,0,4,24;MQ=60;FQ=-108 PL 199,81,0,201,69,198
Cf746836_TGAC_s1v1_contig_289 364 . C G,A 204 . DP=87;AF1=1;AC1=2;DP4=0,0,29,49;MQ=60;FQ=-259 PL 237,232,0,235,211,232
Cf746836_TGAC_s1v1_contig_289 532 . G A,T 205 . DP=63;AF1=1;AC1=2;DP4=0,0,24,34;MQ=60;FQ=-199 PL 238,172,0,237,153,234
Cf746836_TGAC_s1v1_contig_289 1144 . T C,G 132 . DP=21;AF1=1;AC1=2;DP4=0,0,15,5;MQ=60;FQ=-84 PL 165,57,0,163,42,160
Cf746836_TGAC_s1v1_contig_313 6226 . C G,A 126 . DP=40;AF1=1;AC1=2;DP4=0,0,28,5;MQ=60;FQ=-123 PL 159,96,0,158,80,155
Cf746836_TGAC_s1v1_contig_320 23442 . GAAAAAAAA GAAAAAAAAAA,GAAAAAAAAAAA,GAAAAAAAAAAAA 125 . INDEL;DP=71;AF1=1;AC1=2;DP4=0,1,57,4;MQ=60;FQ=-180;PV4=0.081,1,1,0.22 PL 174,153,8,86,0,71,145,121,54,142
Cf746836_TGAC_s1v1_contig_337 2079 . A G,T 170 . DP=152;AF1=1;AC1=2;DP4=0,0,38,110;MQ=60;FQ=-282 PL 203,255,0,200,255,197
Cf746836_TGAC_s1v1_contig_337 3899 . C T,A 159 . DP=72;AF1=1;AC1=2;DP4=0,0,41,29;MQ=60;FQ=-235 PL 192,208,0,176,173,173
Cf746836_TGAC_s1v1_contig_337 23371 . T C,A 206 . DP=113;AF1=1;AC1=2;DP4=0,0,57,44;MQ=60;FQ=-282 PL 239,255,0,237,255,234
Cf746836_TGAC_s1v1_contig_395 1876 . A G,C 222 . DP=49;AF1=1;AC1=2;DP4=0,0,16,31;MQ=60;FQ=-165 PL 255,138,0,245,107,242
Cf746836_TGAC_s1v1_contig_395 1978 . G A,T 208 . DP=50;AF1=1;AC1=2;DP4=0,0,14,35;MQ=60;FQ=-171 PL 241,144,0,243,130,240
Cf746836_TGAC_s1v1_contig_395 3920 . C T,G 78 . DP=46;AF1=1;AC1=2;DP4=0,0,3,43;MQ=60;FQ=-162 PL 111,135,0,111,118,108
Cf746836_TGAC_s1v1_contig_428 1951 . CAAAAAAAAAAAAA CAAAAAAAAAAA,CAAAAAAAAAA 32.5 . INDEL;DP=214;AF1=1;AC1=2;DP4=17,3,115,22;MQ=60;FQ=-154;PV4=1,1,1,1 PL 73,119,0,28,93,17
Cf746836_TGAC_s1v1_contig_446 27722 . G T,C 219 . DP=546;AF1=1;AC1=2;DP4=0,0,36,29;MQ=58;FQ=-220 PL 252,193,0,254,176,251
Cf746836_TGAC_s1v1_contig_446 34927 . A C,T 201 . DP=180;AF1=1;AC1=2;DP4=0,0,91,80;MQ=58;FQ=-282 PL 234,255,0,232,255,229
Cf746836_TGAC_s1v1_contig_470 17964 . C T,G 167 . DP=27;AF1=1;AC1=2;DP4=0,0,20,6;MQ=60;FQ=-102 PL 200,75,0,200,61,197
Cf746836_TGAC_s1v1_contig_473 21759 . T G,A 211 . DP=1179;AF1=1;AC1=2;DP4=1,1,644,411;MQ=60;FQ=-282;PV4=1,4.6e-05,0.47,1 PL 244,255,0,243,255,240
Cf746836_TGAC_s1v1_contig_473 23005 . C T,G 219 . DP=2463;AF1=1;AC1=2;DP4=0,0,771,1559;MQ=60;FQ=-282 PL 252,255,0,255,255,252
Cf746836_TGAC_s1v1_contig_473 23257 . CAAAAAAA CAAAAAAAAA,CAAAAAAAA,CAAAAAAAAAA 186 . INDEL;DP=167;AF1=1;AC1=2;DP4=0,0,4,117;MQ=60;FQ=-290 PL 227,255,0,255,130,207,208,255,229,205
Cf746836_TGAC_s1v1_contig_506 810 . A G,T 132 . DP=15;AF1=1;AC1=2;DP4=0,0,4,11;MQ=60;FQ=-69 PL 165,42,0,150,16,147
Cf746836_TGAC_s1v1_contig_506 1496 . G C,A 204 . DP=11;AF1=1;AC1=2;DP4=0,0,7,3;MQ=60;FQ=-54 PL 237,27,0,221,1,218
Cf746836_TGAC_s1v1_contig_506 3846 . C T,A 201 . DP=119;AF1=1;AC1=2;DP4=0,0,28,57;MQ=60;FQ=-280 PL 234,253,0,236,236,233
Cf746836_TGAC_s1v1_contig_506 44952 . A G,T 220 . DP=51;AF1=1;AC1=2;DP4=0,0,29,21;MQ=60;FQ=-175 PL 253,148,0,249,127,246
Cf746836_TGAC_s1v1_contig_506 49637 . C A,G 159 . DP=26;AF1=1;AC1=2;DP4=0,0,18,5;MQ=59;FQ=-93 PL 192,66,0,178,38,175
Cf746836_TGAC_s1v1_contig_525 13527 . GTTTTTTTT GTTTTTTTTTT,GTTTTTTTTT 66.5 . INDEL;DP=23;AF1=0.5025;AC1=1;DP4=3,3,4,7;MQ=60;FQ=-14.7;PV4=0.64,1,1,0.04 PL 104,0,20,80,0,100
Cf746836_TGAC_s1v1_contig_526 14549 . A G,T 98 . DP=14;AF1=1;AC1=2;DP4=0,0,7,7;MQ=56;FQ=-66 PL 131,39,0,118,14,115
Cf746836_TGAC_s1v1_contig_536 311 . A G,T 109 . DP=135;AF1=1;AC1=2;DP4=0,0,0,125;MQ=56;FQ=-282 PL 142,255,0,141,255,135
Cf746836_TGAC_s1v1_contig_560 1667 . A C,T 95 . DP=56;AF1=1;AC1=2;DP4=1,0,44,4;MQ=60;FQ=-154;PV4=1,1,1,1 PL 128,127,0,117,114,115
Cf746836_TGAC_s1v1_contig_573 9845 . A G,T 215 . DP=353;AF1=1;AC1=2;DP4=0,0,164,169;MQ=58;FQ=-282 PL 248,255,0,250,255,247
Cf746836_TGAC_s1v1_contig_584 17112 . G T,A 216 . DP=35;AF1=1;AC1=2;DP4=0,0,13,18;MQ=60;FQ=-117 PL 249,90,0,247,74,244
Cf746836_TGAC_s1v1_contig_602 5486 . CAAAAAAAA CAAAAAAAAA,CAAAAAAAAAA 54.5 . INDEL;DP=107;AF1=1;AC1=2;DP4=0,0,45,37;MQ=60;FQ=-255 PL 95,220,0,43,53,16
Cf746836_TGAC_s1v1_contig_602 6180 . T C,A 190 . DP=54;AF1=1;AC1=2;DP4=0,0,17,31;MQ=60;FQ=-168 PL 223,141,0,221,123,218
Cf746836_TGAC_s1v1_contig_636 62422 . T C,A 153 . DP=33;AF1=1;AC1=2;DP4=0,0,11,17;MQ=60;FQ=-108 PL 186,81,0,167,47,164
Cf746836_TGAC_s1v1_contig_636 79092 . A G,T 186 . DP=79;AF1=1;AC1=2;DP4=0,0,36,36;MQ=60;FQ=-241 PL 219,214,0,218,194,215
Cf746836_TGAC_s1v1_contig_636 79940 . C A,T 153 . DP=138;AF1=1;AC1=2;DP4=0,0,33,6;MQ=60;FQ=-141 PL 186,114,0,174,87,171
Cf746836_TGAC_s1v1_contig_642 29965 . A G,T 177 . DP=486;AF1=1;AC1=2;DP4=0,0,32,14;MQ=59;FQ=-162 PL 210,135,0,209,118,206
Cf746836_TGAC_s1v1_contig_642 29966 . A G,T 156 . DP=487;AF1=1;AC1=2;DP4=0,0,30,13;MQ=59;FQ=-153 PL 189,126,0,191,112,188
Cf746836_TGAC_s1v1_contig_642 31832 . T G,A 180 . DP=380;AF1=1;AC1=2;DP4=0,0,26,23;MQ=59;FQ=-171 PL 213,144,0,215,130,212
Cf746836_TGAC_s1v1_contig_645 16021 . A C,T 113 . DP=57;AF1=1;AC1=2;DP4=0,0,36,16;MQ=60;FQ=-181 PL 146,154,0,144,134,141
Cf746836_TGAC_s1v1_contig_645 16646 . T C,A 179 . DP=56;AF1=1;AC1=2;DP4=0,0,30,24;MQ=59;FQ=-187 PL 212,160,0,206,136,203
Cf746836_TGAC_s1v1_contig_659 174282 . CAAAAAAAA CAAAAAAAAAA,CAAAAAAAAAAA 107 . INDEL;DP=32;AF1=1;AC1=2;DP4=4,1,4,19;MQ=60;FQ=-42.5;PV4=0.015,1,1,1 PL 181,43,35,126,0,131
Cf746836_TGAC_s1v1_contig_684 10748 . T C,A 174 . DP=163;AF1=1;AC1=2;DP4=0,0,85,64;MQ=23;FQ=-282 PL 207,255,0,208,255,205
Cf746836_TGAC_s1v1_contig_686 69806 . A T,G 161 . DP=53;AF1=1;AC1=2;DP4=0,0,16,35;MQ=60;FQ=-178 PL 194,151,0,195,134,192
Cf746836_TGAC_s1v1_contig_722 567 . CAAAAAAAAA CAAAAAAAA,CAAAAAAA 54.5 . INDEL;DP=140;AF1=1;AC1=2;DP4=10,3,52,64;MQ=60;FQ=-235;PV4=0.039,1,1,0.39 PL 95,200,0,113,255,90
Cf746836_TGAC_s1v1_contig_736 27199 . C T,A 122 . DP=82;AF1=1;AC1=2;DP4=0,0,57,18;MQ=58;FQ=-250 PL 155,223,0,157,205,154
Cf746836_TGAC_s1v1_contig_736 29129 . G A,T 176 . DP=109;AF1=1;AC1=2;DP4=0,0,21,77;MQ=60;FQ=-282 PL 209,255,0,203,255,199
Cf746836_TGAC_s1v1_contig_746 4510 . C T,A 178 . DP=49;AF1=1;AC1=2;DP4=0,0,20,27;MQ=60;FQ=-165 PL 211,138,0,209,120,206
Cf746836_TGAC_s1v1_contig_746 4742 . G A,C 190 . DP=36;AF1=1;AC1=2;DP4=0,0,24,10;MQ=60;FQ=-126 PL 223,99,0,223,84,220
Cf746836_TGAC_s1v1_contig_752 98736 . CTTTTTTTTTTTT CTTTTTTTTTT,CTTTTTTTTT 91.5 . INDEL;DP=117;AF1=1;AC1=2;DP4=5,7,44,33;MQ=60;FQ=-127;PV4=0.36,1,1,1 PL 132,92,0,126,123,112
Cf746836_TGAC_s1v1_contig_752 98985 . ATTTTTTTTTTT ATTTTTTTTT,ATTTTTTTTTTTT 84.5 . INDEL;DP=106;AF1=1;AC1=2;DP4=0,14,4,61;MQ=60;FQ=-107;PV4=1,1,0.32,1 PL 125,72,0,141,124,126
Cf746836_TGAC_s1v1_contig_758 13040 . C G,A 175 . DP=24;AF1=1;AC1=2;DP4=0,0,8,14;MQ=60;FQ=-90 PL 208,63,0,204,46,201
Cf746836_TGAC_s1v1_contig_776 5131 . CTTTTTTT CTTTTTTTT,CTTTTTTTTT 46.5 . INDEL;DP=55;AF1=1;AC1=2;DP4=1,9,9,30;MQ=60;FQ=-54.5;PV4=0.66,1,1,0.098 PL 87,20,0,77,61,84
Cf746836_TGAC_s1v1_contig_776 35091 . CTTTTTTT CTTTTTTTTT,CTTTTTTTTTT 45.2 . INDEL;DP=21;AF1=1;AC1=2;DP4=1,1,0,11;MQ=45;FQ=-34.5;PV4=0.15,1,1.3e-05,1 PL 180,99,99,80,0,84
Cf746836_TGAC_s1v1_contig_780 23933 . C A,G 140 . DP=112;AF1=1;AC1=2;DP4=0,0,2,106;MQ=60;FQ=-282 PL 173,255,0,171,255,168
Cf746836_TGAC_s1v1_contig_786 26739 . C A,G 222 . DP=94;AF1=1;AC1=2;DP4=0,0,63,23;MQ=60;FQ=-277 PL 255,250,0,255,216,254
Cf746836_TGAC_s1v1_contig_805 33479 . AGGGGG AGGGGGG,AAGGGGGG 28.5 . INDEL;DP=35;AF1=1;AC1=2;DP4=0,2,26,0;MQ=39;FQ=-74.5;PV4=0.0026,1,0.00037,0.14 PL 69,40,0,24,4,33
Cf746836_TGAC_s1v1_contig_827 101498 . C T,A 141 . DP=165;AF1=1;AC1=2;DP4=0,0,91,71;MQ=60;FQ=-282 PL 174,255,0,176,255,173
Cf746836_TGAC_s1v1_contig_827 101705 . G A,C 218 . DP=177;AF1=1;AC1=2;DP4=0,0,77,89;MQ=60;FQ=-282 PL 251,255,0,251,255,248
Cf746836_TGAC_s1v1_contig_827 101808 . C G,T 215 . DP=206;AF1=1;AC1=2;DP4=0,0,73,112;MQ=60;FQ=-282 PL 248,255,0,234,255,231
Cf746836_TGAC_s1v1_contig_827 102074 . C G,T 140 . DP=13;AF1=1;AC1=2;DP4=0,0,5,8;MQ=60;FQ=-63 PL 173,36,0,158,10,155
Cf746836_TGAC_s1v1_contig_838 20956 . T G,C 168 . DP=31;AF1=1;AC1=2;DP4=0,0,23,7;MQ=60;FQ=-114 PL 201,87,0,199,71,196
Cf746836_TGAC_s1v1_contig_838 39007 . C A,T 214 . DP=201;AF1=1;AC1=2;DP4=0,0,147,50;MQ=35;FQ=-282 PL 247,255,0,245,255,242
Cf746836_TGAC_s1v1_contig_838 40168 . C A 124 . DP=751;AF1=0.5;AC1=1;DP4=64,156,377,112;MQ=39;FQ=127;PV4=5.5e-34,1.3e-258,1,1 PL 154,0,234
Cf746836_TGAC_s1v1_contig_838 40746 . G A,T 41 . DP=18;AF1=1;AC1=2;DP4=0,0,18,0;MQ=31;FQ=-78 PL 74,51,0,68,33,65
Cf746836_TGAC_s1v1_contig_839 18118 . CTTTTTTT CTTTTTTTT,CTTTTTTTTT,CTTTTTTTTTT 32.5 . INDEL;DP=225;AF1=0.5;AC1=1;DP4=39,37,49,66;MQ=60;FQ=17.5;PV4=0.3,1,1,0.29 PL 122,52,104,93,118,60,218,252,0,108
Cf746836_TGAC_s1v1_contig_852 90837 . CAAAA CAAAAAA,CAAAAAAA 178 . INDEL;DP=18;AF1=0.5001;AC1=1;DP4=4,0,11,2;MQ=60;FQ=-3.84;PV4=1,1,1,0.39 PL 255,39,72,212,0,251
Cf746836_TGAC_s1v1_contig_859 13390 . GAAAAAAAAAA GAAAAAAAAAAAAA,GAAAAAAAAAAAAAA 65.9 . INDEL;DP=112;AF1=0.5554;AC1=1;DP4=18,28,19,12;MQ=60;FQ=-27.5;PV4=0.067,1,1,1 PL 165,62,69,176,0,137
Cf746836_TGAC_s1v1_contig_867 15908 . G A,T 174 . DP=77;AF1=1;AC1=2;DP4=0,0,38,34;MQ=60;FQ=-241 PL 207,214,0,209,197,206
Cf746836_TGAC_s1v1_contig_867 17429 . T A,G 151 . DP=23;AF1=1;AC1=2;DP4=0,0,4,19;MQ=60;FQ=-93 PL 184,66,0,181,50,178
Cf746836_TGAC_s1v1_contig_867 35142 . T A,C 222 . DP=83;AF1=1;AC1=2;DP4=0,0,33,42;MQ=60;FQ=-250 PL 255,223,0,252,196,249
Cf746836_TGAC_s1v1_contig_867 36492 . C T,G 218 . DP=44;AF1=1;AC1=2;DP4=0,0,22,13;MQ=60;FQ=-129 PL 251,102,0,246,82,243
Cf746836_TGAC_s1v1_contig_872 857 . G A,T 167 . DP=42;AF1=1;AC1=2;DP4=0,0,25,16;MQ=60;FQ=-147 PL 200,120,0,196,100,193
Cf746836_TGAC_s1v1_contig_872 4953 . A C,T 157 . DP=136;AF1=1;AC1=2;DP4=0,0,93,34;MQ=59;FQ=-282 PL 190,255,0,189,255,186
Cf746836_TGAC_s1v1_contig_872 9350 . A G,C 222 . DP=72;AF1=1;AC1=2;DP4=0,0,21,45;MQ=60;FQ=-223 PL 255,196,0,255,179,253
Cf746836_TGAC_s1v1_contig_872 9548 . T C,G 216 . DP=77;AF1=1;AC1=2;DP4=0,0,60,15;MQ=59;FQ=-250 PL 249,223,0,248,203,245
Cf746836_TGAC_s1v1_contig_873 48690 . G A,T 190 . DP=36;AF1=1;AC1=2;DP4=0,0,7,28;MQ=59;FQ=-129 PL 223,102,0,219,83,216
Cf746836_TGAC_s1v1_contig_873 48704 . A G,C 82 . DP=27;AF1=1;AC1=2;DP4=0,0,2,25;MQ=58;FQ=-105 PL 115,78,0,117,66,114
Cf746836_TGAC_s1v1_contig_878 12824 . T C,A 143 . DP=89;AF1=1;AC1=2;DP4=0,0,46,31;MQ=60;FQ=-256 PL 176,229,0,172,205,169
Cf746836_TGAC_s1v1_contig_878 22008 . A G,T 114 . DP=44;AF1=1;AC1=2;DP4=0,0,30,4;MQ=60;FQ=-123 PL 147,96,0,141,63,135
Cf746836_TGAC_s1v1_contig_878 50387 . G A,C 120 . DP=22;AF1=1;AC1=2;DP4=0,0,13,9;MQ=60;FQ=-90 PL 153,63,0,153,49,150
Cf746836_TGAC_s1v1_contig_888 6307 . G A,C 205 . DP=37;AF1=1;AC1=2;DP4=0,0,14,21;MQ=60;FQ=-129 PL 238,102,0,236,85,233
Cf746836_TGAC_s1v1_contig_888 6340 . T C,A 122 . DP=34;AF1=1;AC1=2;DP4=0,0,14,15;MQ=60;FQ=-111 PL 155,84,0,155,70,152
Cf746836_TGAC_s1v1_contig_888 7573 . G A,C 151 . DP=37;AF1=1;AC1=2;DP4=0,0,14,21;MQ=60;FQ=-129 PL 184,102,0,172,74,169
Cf746836_TGAC_s1v1_contig_888 11406 . CAAAAA CAAAA,CAA 176 . INDEL;DP=167;AF1=1;AC1=2;DP4=0,0,89,55;MQ=60;FQ=-290 PL 217,255,0,206,255,203
Cf746836_TGAC_s1v1_contig_890 36846 . TTT TCTTGGATGGTT,TGGATGGTT 133 . INDEL;DP=249;AF1=0.5102;AC1=1;DP4=9,8,5,7;MQ=56;FQ=-20.6;PV4=0.71,1,1,0.084 PL 199,29,43,178,0,182
Cf746836_TGAC_s1v1_contig_909 543 . T C,A 196 . DP=901;AF1=1;AC1=2;DP4=0,0,372,427;MQ=60;FQ=-282 PL 229,255,0,231,255,228
Cf746836_TGAC_s1v1_contig_915 3919 . C T,A 100 . DP=1011;AF1=1;AC1=2;DP4=0,0,5,13;MQ=60;FQ=-78 PL 133,51,0,134,39,131
Cf746836_TGAC_s1v1_contig_915 22079 . T G,A 162 . DP=34;AF1=1;AC1=2;DP4=0,0,25,6;MQ=60;FQ=-117 PL 195,90,0,190,70,187
Cf746836_TGAC_s1v1_contig_917 19776 . A G,T 126 . DP=31;AF1=1;AC1=2;DP4=0,0,15,14;MQ=60;FQ=-111 PL 159,84,0,158,69,155
Cf746836_TGAC_s1v1_contig_933 19670 . G C,A 122 . DP=16;AF1=1;AC1=2;DP4=0,0,9,6;MQ=59;FQ=-69 PL 155,42,0,152,27,149
Cf746836_TGAC_s1v1_contig_933 22523 . C T,A 88 . DP=13;AF1=1;AC1=2;DP4=0,0,5,5;MQ=60;FQ=-54 PL 121,27,0,111,8,108
Cf746836_TGAC_s1v1_contig_933 28406 . T C,A 178 . DP=25;AF1=1;AC1=2;DP4=0,0,11,11;MQ=60;FQ=-90 PL 211,63,0,200,39,197
Cf746836_TGAC_s1v1_contig_942 94005 . CAAAAAAAAA CAAAAAAAAAAA,CAAAAAAAAAAAA 51.9 . INDEL;DP=102;AF1=0.8294;AC1=1;DP4=0,33,2,30;MQ=60;FQ=-33.5;PV4=0.24,1,1,1 PL 104,16,17,111,0,63
Cf746836_TGAC_s1v1_contig_950 85933 . T G,A 158 . DP=514;AF1=1;AC1=2;DP4=0,0,66,45;MQ=60;FQ=-282 PL 191,255,0,194,255,188
Cf746836_TGAC_s1v1_contig_950 88682 . A G,T 196 . DP=27;AF1=1;AC1=2;DP4=0,0,9,16;MQ=60;FQ=-99 PL 229,72,0,228,58,225
Cf746836_TGAC_s1v1_contig_950 89328 . T C,A 67 . DP=16;AF1=1;AC1=2;DP4=0,0,14,2;MQ=60;FQ=-72 PL 100,45,0,82,15,79
Cf746836_TGAC_s1v1_contig_950 90513 . T C,A 181 . DP=155;AF1=1;AC1=2;DP4=0,0,54,85;MQ=60;FQ=-282 PL 214,255,0,216,255,213
Cf746836_TGAC_s1v1_contig_950 91917 . C A,G 103 . DP=59;AF1=1;AC1=2;DP4=0,0,44,3;MQ=60;FQ=-165 PL 136,138,0,129,115,126
Cf746836_TGAC_s1v1_contig_953 222 . A G,T 207 . DP=79;AF1=1;AC1=2;DP4=0,0,27,43;MQ=60;FQ=-235 PL 240,208,0,232,182,229
Cf746836_TGAC_s1v1_contig_953 8910 . G T,C 209 . DP=27;AF1=1;AC1=2;DP4=0,0,25,1;MQ=59;FQ=-102 PL 242,75,0,241,59,238
Cf746836_TGAC_s1v1_contig_955 14592 . A G,T 92 . DP=12;AF1=1;AC1=2;DP4=0,0,7,5;MQ=51;FQ=-60 PL 125,33,0,119,16,116
Cf746836_TGAC_s1v1_contig_956 10905 . CAAAAAAAAAA CAAAAAAAAA,CAAAAAAAA 44.5 . INDEL;DP=173;AF1=1;AC1=2;DP4=5,6,79,68;MQ=60;FQ=-290;PV4=0.76,1,1,0.36 PL 85,255,0,102,255,82
Cf746836_TGAC_s1v1_contig_966 17748 . G A,C 144 . DP=85;AF1=1;AC1=2;DP4=0,0,39,43;MQ=60;FQ=-271 PL 177,244,0,172,220,169
Cf746836_TGAC_s1v1_contig_975 494 . G A,T 68 . DP=65;AF1=1;AC1=2;DP4=0,0,0,65;MQ=60;FQ=-220 PL 101,193,0,102,176,99
Cf746836_TGAC_s1v1_contig_988 35878 . GAAAAAA GAAAAAAA,GAAAAAAAA 195 . INDEL;DP=211;AF1=1;AC1=2;DP4=0,1,37,141;MQ=60;FQ=-290;PV4=1,1,1,1 PL 236,255,0,228,255,225
Cf746836_TGAC_s1v1_contig_988 40513 . C T,A 192 . DP=135;AF1=1;AC1=2;DP4=0,0,70,50;MQ=60;FQ=-282 PL 225,255,0,227,255,224
Cf746836_TGAC_s1v1_contig_988 49754 . G T,A 94 . DP=22;AF1=1;AC1=2;DP4=0,0,8,13;MQ=60;FQ=-87 PL 127,60,0,123,43,120
Cf746836_TGAC_s1v1_contig_988 53853 . GAAAAAAAA GAAAAAAAAA,GAAAAAAAAAA 59.5 . INDEL;DP=138;AF1=1;AC1=2;DP4=3,1,61,53;MQ=60;FQ=-290;PV4=0.62,1,1,1 PL 100,255,0,37,129,25
Cf746836_TGAC_s1v1_contig_988 56391 . T C,G 178 . DP=64;AF1=1;AC1=2;DP4=0,0,19,24;MQ=60;FQ=-153 PL 211,126,0,212,111,209
Cf746836_TGAC_s1v1_contig_988 70690 . C T,G 88 . DP=45;AF1=1;AC1=2;DP4=0,0,27,0;MQ=60;FQ=-105 PL 121,78,0,122,65,119
Cf746836_TGAC_s1v1_contig_994 3538 . A T,G 74 . DP=43;AF1=1;AC1=2;DP4=0,0,2,8;MQ=60;FQ=-54 PL 107,27,0,101,11,98
Cf746836_TGAC_s1v1_contig_998 11754 . GAAAAAAAA GAAAAAAAAAA,GAAAAAAAAAAA 182 . INDEL;DP=240;AF1=0.5013;AC1=1;DP4=24,49,30,99;MQ=60;FQ=-11.8;PV4=0.14,1,1,1 PL 220,0,23,222,128,143
Cf746836_TGAC_s1v1_contig_998 22097 . G C,A 142 . DP=28;AF1=1;AC1=2;DP4=0,0,18,8;MQ=56;FQ=-102 PL 175,75,0,174,59,171
Cf746836_TGAC_s1v1_contig_1002 24823 . A G,T 200 . DP=65;AF1=1;AC1=2;DP4=0,0,40,24;MQ=60;FQ=-217 PL 233,190,0,235,174,232
Cf746836_TGAC_s1v1_contig_1002 26619 . T C,G 197 . DP=43;AF1=1;AC1=2;DP4=0,0,30,11;MQ=59;FQ=-147 PL 230,120,0,229,103,226
Cf746836_TGAC_s1v1_contig_1002 27132 . T C,A 151 . DP=19;AF1=1;AC1=2;DP4=0,0,5,13;MQ=60;FQ=-78 PL 184,51,0,184,39,181
Cf746836_TGAC_s1v1_contig_1002 27249 . A G,T 178 . DP=31;AF1=1;AC1=2;DP4=0,0,19,11;MQ=60;FQ=-114 PL 211,87,0,202,64,199
Cf746836_TGAC_s1v1_contig_1015 56008 . CTTTTTTTTTT CTTTTTTTTT,CTTTTTTTT 88.5 . INDEL;DP=227;AF1=1;AC1=2;DP4=2,16,17,168;MQ=60;FQ=-290;PV4=0.68,0.00091,1,1 PL 129,255,0,131,255,116
Cf746836_TGAC_s1v1_contig_1015 61988 . T G,C 170 . DP=556;AF1=1;AC1=2;DP4=0,0,72,111;MQ=60;FQ=-282 PL 203,255,0,203,255,200
Cf746836_TGAC_s1v1_contig_1085 25352 . G A,T 140 . DP=129;AF1=1;AC1=2;DP4=0,0,49,69;MQ=21;FQ=-282 PL 173,255,0,175,255,172
Cf746836_TGAC_s1v1_contig_1096 1562 . C T,G 184 . DP=475;AF1=1;AC1=2;DP4=0,0,219,89;MQ=57;FQ=-282 PL 217,255,0,218,255,215
Cf746836_TGAC_s1v1_contig_1119 62095 . A G,T 196 . DP=184;AF1=1;AC1=2;DP4=1,0,126,49;MQ=35;FQ=-282;PV4=1,1,1,0.3 PL 229,255,0,230,255,227
Cf746836_TGAC_s1v1_contig_1119 62653 . A G,T 72 . DP=27;AF1=1;AC1=2;DP4=0,0,26,0;MQ=42;FQ=-102 PL 105,75,0,106,62,103
Cf746836_TGAC_s1v1_contig_1136 1340 . GTTTTTT GTTTTTTT,GTTTTTTTT 54.5 . INDEL;DP=166;AF1=1;AC1=2;DP4=0,0,135,3;MQ=60;FQ=-290 PL 95,255,0,83,255,77
Cf746836_TGAC_s1v1_contig_1137 11378 . T A,G 103 . DP=17;AF1=1;AC1=2;DP4=0,1,11,5;MQ=60;FQ=-36;PV4=0.35,8.9e-07,1,0.28 PL 138,12,3,111,0,132
Cf746836_TGAC_s1v1_contig_1137 82014 . GAAAAAAAA GAAAAAAAAAA,GAAAAAAAAAAA 172 . INDEL;DP=237;AF1=1;AC1=2;DP4=17,36,39,96;MQ=60;FQ=-50.5;PV4=0.72,1,1,1 PL 212,16,0,93,15,73
Cf746836_TGAC_s1v1_contig_1139 5713 . C T,G 189 . DP=162;AF1=1;AC1=2;DP4=0,0,97,57;MQ=60;FQ=-282 PL 222,255,0,223,255,220
Cf746836_TGAC_s1v1_contig_1139 6052 . G C,T 194 . DP=117;AF1=1;AC1=2;DP4=0,0,42,57;MQ=60;FQ=-282 PL 227,255,0,228,255,225
Cf746836_TGAC_s1v1_contig_1139 18188 . CTTTTTTTTTT CTTTTTTTTT,CTTTTTTTT 77.5 . INDEL;DP=139;AF1=1;AC1=2;DP4=1,2,24,90;MQ=60;FQ=-290;PV4=0.52,1,1,0.46 PL 118,255,0,118,255,113
Cf746836_TGAC_s1v1_contig_1148 13625 . A T,C 132 . DP=14;AF1=1;AC1=2;DP4=0,0,7,6;MQ=60;FQ=-63 PL 165,36,0,162,22,159
Cf746836_TGAC_s1v1_contig_1173 39675 . T C,A 184 . DP=53;AF1=1;AC1=2;DP4=0,0,19,32;MQ=60;FQ=-178 PL 217,151,0,217,133,214
Cf746836_TGAC_s1v1_contig_1173 43734 . G A,T 208 . DP=36;AF1=1;AC1=2;DP4=0,0,26,8;MQ=59;FQ=-126 PL 241,99,0,236,80,233
Cf746836_TGAC_s1v1_contig_1183 103 . G A,T 194 . DP=126;AF1=1;AC1=2;DP4=0,0,117,8;MQ=60;FQ=-282 PL 227,255,0,228,255,225
Cf746836_TGAC_s1v1_contig_1183 1982 . A G,T 52 . DP=20;AF1=1;AC1=2;DP4=0,0,1,11;MQ=57;FQ=-60 PL 85,33,0,76,13,73
Cf746836_TGAC_s1v1_contig_1183 47640 . T C,A 191 . DP=91;AF1=1;AC1=2;DP4=0,0,34,48;MQ=60;FQ=-271 PL 224,244,0,222,223,219
Cf746836_TGAC_s1v1_contig_1183 54255 . A G,T 212 . DP=1086;AF1=1;AC1=2;DP4=0,3,526,455;MQ=60;FQ=-282;PV4=0.1,1e-06,0.46,1 PL 245,255,0,247,255,244
Cf746836_TGAC_s1v1_contig_1183 54546 . T G,A 210 . DP=771;AF1=1;AC1=2;DP4=0,0,300,264;MQ=60;FQ=-282 PL 243,255,0,236,255,233
Cf746836_TGAC_s1v1_contig_1183 55151 . A G,T 169 . DP=464;AF1=1;AC1=2;DP4=0,0,24,20;MQ=59;FQ=-156 PL 202,129,0,201,112,198
Cf746836_TGAC_s1v1_contig_1185 15050 . C A,T 203 . DP=149;AF1=1;AC1=2;DP4=0,0,27,22;MQ=60;FQ=-171 PL 236,144,0,237,129,234
Cf746836_TGAC_s1v1_contig_1206 125642 . A C,T 126 . DP=63;AF1=1;AC1=2;DP4=0,0,47,11;MQ=60;FQ=-199 PL 159,172,0,155,150,152
Cf746836_TGAC_s1v1_contig_1215 3039 . A C,T 77 . DP=67;AF1=1;AC1=2;DP4=0,0,19,3;MQ=60;FQ=-90 PL 110,63,0,100,39,97
Cf746836_TGAC_s1v1_contig_1220 24013 . A G,T 196 . DP=26;AF1=1;AC1=2;DP4=0,0,13,13;MQ=60;FQ=-102 PL 229,75,0,230,63,227
Cf746836_TGAC_s1v1_contig_1220 26569 . CAAAAAA CAAAAAAA,CAAAAAAAA 50.5 . INDEL;DP=137;AF1=1;AC1=2;DP4=0,0,124,2;MQ=60;FQ=-290 PL 91,255,0,82,255,79
Cf746836_TGAC_s1v1_contig_1220 30025 . G A,C 138 . DP=111;AF1=1;AC1=2;DP4=0,0,42,67;MQ=60;FQ=-282 PL 171,255,0,174,255,170
Cf746836_TGAC_s1v1_contig_1220 44867 . T C,A 192 . DP=74;AF1=1;AC1=2;DP4=0,0,41,32;MQ=59;FQ=-244 PL 225,217,0,214,187,211
Cf746836_TGAC_s1v1_contig_1220 46863 . A C,G 211 . DP=78;AF1=1;AC1=2;DP4=0,0,43,29;MQ=60;FQ=-241 PL 244,214,0,246,197,243
Cf746836_TGAC_s1v1_contig_1221 37130 . A C,T 181 . DP=58;AF1=1;AC1=2;DP4=0,0,22,31;MQ=60;FQ=-184 PL 214,157,0,214,139,211
Cf746836_TGAC_s1v1_contig_1221 65755 . ATTTTTTTTTTT ATTTTTTTTTT,ATTTTTTTTT 35.5 . INDEL;DP=193;AF1=1;AC1=2;DP4=3,1,35,55;MQ=59;FQ=-236;PV4=0.3,0.37,0.37,1 PL 76,201,0,64,163,57
Cf746836_TGAC_s1v1_contig_1221 68140 . TAAAAAAAA TAAAAAAAAA,TAAAAAAAAAA 38.5 . INDEL;DP=120;AF1=1;AC1=2;DP4=0,1,4,19;MQ=59;FQ=-86.5;PV4=1,1,0.41,1 PL 79,52,0,58,19,55
Cf746836_TGAC_s1v1_contig_1221 69196 . G T,A 193 . DP=736;AF1=1;AC1=2;DP4=0,0,58,46;MQ=60;FQ=-282 PL 226,255,0,228,255,225
Cf746836_TGAC_s1v1_contig_1241 331 . GAAAAAAA GAAAAAAAA,GAAAAAAAAA 68.5 . INDEL;DP=148;AF1=1;AC1=2;DP4=1,0,71,28;MQ=60;FQ=-290;PV4=1,1,1,0.3 PL 109,255,0,71,186,63
Cf746836_TGAC_s1v1_contig_1241 541 . T TTA,TTAA 86.5 . INDEL;DP=205;AF1=1;AC1=2;DP4=0,0,16,4;MQ=59;FQ=-88.5 PL 127,54,0,96,0,90
Cf746836_TGAC_s1v1_contig_1241 573 . GAAAAAAAA GAAAAAAAAA,GAAAAAAAAAA 66.5 . INDEL;DP=236;AF1=1;AC1=2;DP4=1,1,44,45;MQ=60;FQ=-267;PV4=1,1,0.44,1 PL 107,232,0,98,219,94
Cf746836_TGAC_s1v1_contig_1254 12098 . A C,T,G 221 . DP=75;AF1=1;AC1=2;DP4=0,0,31,37;MQ=60;FQ=-226 PL 254,199,0,252,178,249,255,183,251,253
Cf746836_TGAC_s1v1_contig_1266 87 . G T,A 222 . DP=38;AF1=1;AC1=2;DP4=0,0,35,3;MQ=60;FQ=-135 PL 255,108,0,231,42,225
Cf746836_TGAC_s1v1_contig_1288 61646 . C G,A 188 . DP=190;AF1=1;AC1=2;DP4=0,0,95,80;MQ=60;FQ=-282 PL 221,255,0,222,255,219
Cf746836_TGAC_s1v1_contig_1288 66415 . C A,T 138 . DP=1635;AF1=1;AC1=2;DP4=0,0,14,10;MQ=60;FQ=-96 PL 171,69,0,171,56,168
Cf746836_TGAC_s1v1_contig_1288 68983 . T TC,TCTC 194 . INDEL;DP=156;AF1=1;AC1=2;DP4=0,0,53,68;MQ=54;FQ=-270 PL 255,255,20,236,0,212
Cf746836_TGAC_s1v1_contig_1288 94343 . G C,T 175 . DP=119;AF1=1;AC1=2;DP4=0,0,66,49;MQ=60;FQ=-282 PL 208,255,0,203,255,200
Cf746836_TGAC_s1v1_contig_1288 94439 . C G,T 206 . DP=104;AF1=1;AC1=2;DP4=0,0,34,62;MQ=59;FQ=-282 PL 239,255,0,233,255,229
Cf746836_TGAC_s1v1_contig_1288 95400 . A T,C 130 . DP=23;AF1=1;AC1=2;DP4=0,0,21,2;MQ=60;FQ=-93 PL 163,66,0,157,47,154
Cf746836_TGAC_s1v1_contig_1288 96077 . G A,C 154 . DP=88;AF1=1;AC1=2;DP4=0,0,44,43;MQ=60;FQ=-282 PL 187,255,0,187,239,184
Cf746836_TGAC_s1v1_contig_1288 96216 . G C,T 181 . DP=86;AF1=1;AC1=2;DP4=0,0,37,36;MQ=60;FQ=-244 PL 214,217,0,201,185,198
Cf746836_TGAC_s1v1_contig_1288 100901 . A G,T 61 . DP=13;AF1=1;AC1=2;DP4=0,0,5,5;MQ=60;FQ=-54 PL 94,27,0,83,6,80
Cf746836_TGAC_s1v1_contig_1288 113116 . G T,C 179 . DP=50;AF1=1;AC1=2;DP4=0,0,19,30;MQ=51;FQ=-171 PL 212,144,0,209,125,206
Cf746836_TGAC_s1v1_contig_1325 96077 . T C,A 169 . DP=80;AF1=1;AC1=2;DP4=0,0,35,39;MQ=60;FQ=-247 PL 202,220,0,201,200,198
Cf746836_TGAC_s1v1_contig_1325 98771 . TT TTCT,TCT 131 . INDEL;DP=37;AF1=1;AC1=2;DP4=0,0,9,6;MQ=60;FQ=-76.5 PL 172,42,0,173,32,170
Cf746836_TGAC_s1v1_contig_1339 24969 . G A,C 185 . DP=59;AF1=1;AC1=2;DP4=0,0,23,22;MQ=60;FQ=-159 PL 218,132,0,220,117,217
Cf746836_TGAC_s1v1_contig_1339 25787 . T C,G 139 . DP=56;AF1=1;AC1=2;DP4=0,0,30,18;MQ=60;FQ=-168 PL 172,141,0,160,113,157
Cf746836_TGAC_s1v1_contig_1339 25811 . G C,A 189 . DP=81;AF1=1;AC1=2;DP4=0,0,55,24;MQ=60;FQ=-262 PL 222,235,0,223,217,220
Cf746836_TGAC_s1v1_contig_1339 25817 . T C,G 215 . DP=78;AF1=1;AC1=2;DP4=0,0,47,27;MQ=60;FQ=-247 PL 248,220,0,250,203,247
Cf746836_TGAC_s1v1_contig_1339 30112 . CTTTTTT CTTTTTTT,CTTTTTTTT 136 . INDEL;DP=120;AF1=1;AC1=2;DP4=0,0,45,56;MQ=60;FQ=-290 PL 177,255,0,156,222,147
Cf746836_TGAC_s1v1_contig_1340 7551 . A C,T 166 . DP=37;AF1=1;AC1=2;DP4=0,0,25,5;MQ=60;FQ=-114 PL 199,87,0,182,55,179
Cf746836_TGAC_s1v1_contig_1343 39264 . CAAAAAAAAAA CCAAAAAAAAAAA,CCAAAAAAAAAAAA,CCAAAAAAAAAAAAA 73.5 . INDEL;DP=125;AF1=1;AC1=2;DP4=9,2,62,22;MQ=60;FQ=-116;PV4=0.72,1,1,1 PL 255,222,141,113,0,96,206,181,49,193
Cf746836_TGAC_s1v1_contig_1343 39359 . GAAAAAA GAAAAAAAAA,GAAAAAAAA,GAAAAAAA 95.5 . INDEL;DP=59;AF1=0.5064;AC1=1;DP4=2,1,3,9;MQ=60;FQ=-18.6;PV4=0.24,1,1,0.12 PL 178,45,61,115,0,133,156,41,111,174
Cf746836_TGAC_s1v1_contig_1358 118060 . C G,A 222 . DP=75;AF1=1;AC1=2;DP4=0,0,45,27;MQ=60;FQ=-241 PL 255,214,0,249,189,246
Cf746836_TGAC_s1v1_contig_1358 120371 . A G,T 114 . DP=58;AF1=1;AC1=2;DP4=0,0,29,25;MQ=60;FQ=-187 PL 147,160,0,148,143,145
Cf746836_TGAC_s1v1_contig_1369 4117 . T C,A 179 . DP=73;AF1=1;AC1=2;DP4=0,0,25,42;MQ=60;FQ=-226 PL 212,199,0,214,183,211
Cf746836_TGAC_s1v1_contig_1369 6103 . A G,T 142 . DP=54;AF1=1;AC1=2;DP4=0,0,27,24;MQ=60;FQ=-178 PL 175,151,0,172,130,169
Cf746836_TGAC_s1v1_contig_1369 19737 . GAAAAAAAAAA GAAAAAAAAAAAA,GAAAAAAAAAAAAA 24.3 . INDEL;DP=162;AF1=0.6243;AC1=1;DP4=33,17,22,13;MQ=60;FQ=-30.5;PV4=0.82,1,1,8.8e-05 PL 77,16,20,123,0,70
Cf746836_TGAC_s1v1_contig_1379 27208 . A C,T 201 . DP=166;AF1=1;AC1=2;DP4=0,0,78,81;MQ=60;FQ=-282 PL 234,255,0,227,255,221
Cf746836_TGAC_s1v1_contig_1381 11399 . G C,A 218 . DP=137;AF1=1;AC1=2;DP4=0,0,63,61;MQ=60;FQ=-282 PL 251,255,0,253,255,250
Cf746836_TGAC_s1v1_contig_1381 15943 . A G,C 143 . DP=35;AF1=1;AC1=2;DP4=0,0,16,16;MQ=59;FQ=-120 PL 176,93,0,173,76,170
Cf746836_TGAC_s1v1_contig_1385 27802 . CAAAA CAAAAA,CAAAAAA 40.5 . INDEL;DP=25;AF1=0.5002;AC1=1;DP4=2,1,11,1;MQ=55;FQ=-5.12;PV4=0.37,1,0.19,1 PL 84,6,37,34,0,75
Cf746836_TGAC_s1v1_contig_1396 162161 . G A,C 81 . DP=13;AF1=1;AC1=2;DP4=0,0,8,4;MQ=60;FQ=-60 PL 114,33,0,107,15,104
Cf746836_TGAC_s1v1_contig_1412 11774 . G A,T,C 212 . DP=43;AF1=1;AC1=2;DP4=0,0,27,14;MQ=60;FQ=-144 PL 245,117,0,246,103,243,247,104,246,244
Cf746836_TGAC_s1v1_contig_1412 12514 . T G,A 209 . DP=80;AF1=1;AC1=2;DP4=0,0,41,27;MQ=60;FQ=-229 PL 242,202,0,244,185,241
Cf746836_TGAC_s1v1_contig_1412 13557 . A T,G 179 . DP=200;AF1=1;AC1=2;DP4=0,0,38,6;MQ=60;FQ=-156 PL 212,129,0,212,113,209
Cf746836_TGAC_s1v1_contig_1412 25626 . A T,C 154 . DP=64;AF1=1;AC1=2;DP4=0,0,24,34;MQ=60;FQ=-199 PL 187,172,0,170,137,167
Cf746836_TGAC_s1v1_contig_1457 12200 . C T,G 150 . DP=75;AF1=1;AC1=2;DP4=0,0,27,37;MQ=60;FQ=-217 PL 183,190,0,185,174,182
Cf746836_TGAC_s1v1_contig_1457 63728 . G C,T 172 . DP=362;AF1=1;AC1=2;DP4=0,0,110,88;MQ=60;FQ=-282 PL 205,255,0,207,255,204
Cf746836_TGAC_s1v1_contig_1467 68200 . T G,C 174 . DP=1122;AF1=1;AC1=2;DP4=0,0,614,454;MQ=59;FQ=-282 PL 207,255,0,209,255,206
Cf746836_TGAC_s1v1_contig_1470 90342 . G A,T 133 . DP=21;AF1=1;AC1=2;DP4=0,0,10,8;MQ=60;FQ=-78 PL 166,51,0,164,36,161
Cf746836_TGAC_s1v1_contig_1470 91701 . C T,A 53 . DP=14;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-63 PL 86,36,0,84,22,81
Cf746836_TGAC_s1v1_contig_1479 25943 . CTTTTTTTTTTT CTTTTTTTT,CTTTTTTTTT 214 . INDEL;DP=172;AF1=1;AC1=2;DP4=8,14,49,49;MQ=60;FQ=-113;PV4=0.35,1,1,1 PL 255,78,0,255,132,240
Cf746836_TGAC_s1v1_contig_1480 14900 . C T,G 121 . DP=11;AF1=1;AC1=2;DP4=0,0,4,7;MQ=60;FQ=-57 PL 154,30,0,144,10,141
Cf746836_TGAC_s1v1_contig_1495 46293 . GAAAAAAAA GAAAAAAAAAA,GAAAAAAAAAAA,GAAAAAAAAA 135 . INDEL;DP=80;AF1=1;AC1=2;DP4=0,3,5,54;MQ=60;FQ=-139;PV4=1,1,1,0.29 PL 176,104,0,107,14,101,160,46,83,150
Cf746836_TGAC_s1v1_contig_1511 68987 . C T,A 127 . DP=15;AF1=1;AC1=2;DP4=0,0,10,4;MQ=60;FQ=-66 PL 160,39,0,154,22,151
Cf746836_TGAC_s1v1_contig_1514 25294 . T C,A 148 . DP=30;AF1=1;AC1=2;DP4=0,0,13,15;MQ=58;FQ=-108 PL 181,81,0,178,63,174
Cf746836_TGAC_s1v1_contig_1519 58150 . C A,G 152 . DP=58;AF1=1;AC1=2;DP4=0,0,16,36;MQ=60;FQ=-181 PL 185,154,0,186,138,183
Cf746836_TGAC_s1v1_contig_1519 72987 . T G,A 200 . DP=275;AF1=1;AC1=2;DP4=0,0,121,127;MQ=60;FQ=-282 PL 233,255,0,235,255,232
Cf746836_TGAC_s1v1_contig_1536 6846 . A G,C 190 . DP=33;AF1=1;AC1=2;DP4=0,0,19,10;MQ=60;FQ=-111 PL 223,84,0,223,70,220
Cf746836_TGAC_s1v1_contig_1537 58269 . C T,G 179 . DP=200;AF1=1;AC1=2;DP4=0,0,42,16;MQ=59;FQ=-199 PL 212,172,0,214,155,211
Cf746836_TGAC_s1v1_contig_1537 69819 . A C,T 211 . DP=63;AF1=1;AC1=2;DP4=0,0,22,40;MQ=60;FQ=-211 PL 244,184,0,246,168,243
Cf746836_TGAC_s1v1_contig_1537 78626 . T C,A 193 . DP=30;AF1=1;AC1=2;DP4=0,0,11,19;MQ=59;FQ=-114 PL 226,87,0,227,73,224
Cf746836_TGAC_s1v1_contig_1537 78642 . A G,T 194 . DP=25;AF1=1;AC1=2;DP4=0,0,8,17;MQ=60;FQ=-99 PL 227,72,0,227,59,224
Cf746836_TGAC_s1v1_contig_1537 81867 . A G,C 222 . DP=150;AF1=1;AC1=2;DP4=0,0,66,73;MQ=60;FQ=-282 PL 255,255,0,255,255,254
Cf746836_TGAC_s1v1_contig_1537 83519 . T C,A 45 . DP=38;AF1=1;AC1=2;DP4=0,0,1,9;MQ=60;FQ=-54 PL 78,27,0,76,14,73
Cf746836_TGAC_s1v1_contig_1542 54259 . T C,G 161 . DP=81;AF1=1;AC1=2;DP4=0,0,48,29;MQ=60;FQ=-256 PL 194,229,0,191,207,188
Cf746836_TGAC_s1v1_contig_1542 74497 . G T,C 132 . DP=28;AF1=1;AC1=2;DP4=0,0,2,26;MQ=59;FQ=-108 PL 165,81,0,162,64,159
Cf746836_TGAC_s1v1_contig_1542 75243 . T A,G 166 . DP=27;AF1=1;AC1=2;DP4=0,0,21,5;MQ=60;FQ=-99 PL 199,72,0,191,39,185
Cf746836_TGAC_s1v1_contig_1542 85334 . G A,C 186 . DP=125;AF1=1;AC1=2;DP4=0,0,87,33;MQ=60;FQ=-282 PL 219,255,0,221,255,218
Cf746836_TGAC_s1v1_contig_1585 61003 . T C,A 171 . DP=58;AF1=1;AC1=2;DP4=0,0,32,22;MQ=60;FQ=-187 PL 204,160,0,204,141,201
Cf746836_TGAC_s1v1_contig_1585 118092 . C T,G 132 . DP=28;AF1=1;AC1=2;DP4=0,0,2,25;MQ=60;FQ=-105 PL 165,78,0,159,58,156
Cf746836_TGAC_s1v1_contig_1618 59792 . ATTTTTT ATTTTTTT,ATTTTTTTT 148 . INDEL;DP=197;AF1=1;AC1=2;DP4=0,1,85,73;MQ=60;FQ=-290;PV4=0.47,1,1,1 PL 189,255,0,181,255,178
Cf746836_TGAC_s1v1_contig_1618 80270 . C T,G 93 . DP=94;AF1=1;AC1=2;DP4=0,0,0,93;MQ=23;FQ=-282 PL 126,255,0,108,240,105
Cf746836_TGAC_s1v1_contig_1618 88399 . A G,C 161 . DP=18;AF1=1;AC1=2;DP4=0,0,7,6;MQ=60;FQ=-63 PL 194,36,0,186,17,183
Cf746836_TGAC_s1v1_contig_1618 116040 . C T,G 164 . DP=19;AF1=1;AC1=2;DP4=0,0,0,15;MQ=60;FQ=-69 PL 197,42,0,188,22,185
Cf746836_TGAC_s1v1_contig_1625 41628 . A G,C 178 . DP=68;AF1=1;AC1=2;DP4=0,0,18,48;MQ=60;FQ=-223 PL 211,196,0,213,179,210
Cf746836_TGAC_s1v1_contig_1625 47058 . T C,A 194 . DP=56;AF1=1;AC1=2;DP4=0,0,29,16;MQ=60;FQ=-159 PL 227,132,0,228,117,225
Cf746836_TGAC_s1v1_contig_1625 47720 . C T,G 176 . DP=100;AF1=1;AC1=2;DP4=0,0,57,42;MQ=60;FQ=-282 PL 209,255,0,211,255,208
Cf746836_TGAC_s1v1_contig_1656 48832 . A G,T 60 . DP=18;AF1=1;AC1=2;DP4=0,0,0,17;MQ=60;FQ=-75 PL 93,48,0,77,20,74
Cf746836_TGAC_s1v1_contig_1656 71049 . C A,G 200 . DP=98;AF1=1;AC1=2;DP4=0,0,45,45;MQ=60;FQ=-282 PL 233,255,0,238,234,232
Cf746836_TGAC_s1v1_contig_1666 18571 . TAAAAAAAAAAAAA TAAAAAAAAAAAAAAA,TAAAAAAAAAAAAAAAA,TAAAAAAAAAAAAAAAAA 23.5 . INDEL;DP=88;AF1=1;AC1=2;DP4=0,0,15,9;MQ=55;FQ=-73.5 PL 134,109,70,76,2,55,83,25,0,71
Cf746836_TGAC_s1v1_contig_1666 26269 . GAAAAAAAA GAAAAAAAAAA,GAAAAAAAAAAA,GAAAAAAAAAAAA 214 . INDEL;DP=189;AF1=1;AC1=2;DP4=0,0,72,79;MQ=60;FQ=-290 PL 255,255,0,128,39,83,210,255,20,201
Cf746836_TGAC_s1v1_contig_1666 44253 . T C,A 190 . DP=23;AF1=1;AC1=2;DP4=0,0,9,14;MQ=59;FQ=-93 PL 223,66,0,205,34,202
Cf746836_TGAC_s1v1_contig_1666 44520 . C T,A 217 . DP=12;AF1=1;AC1=2;DP4=0,0,4,8;MQ=56;FQ=-60 PL 250,33,0,242,15,239
Cf746836_TGAC_s1v1_contig_1681 87159 . A G,T 181 . DP=457;AF1=1;AC1=2;DP4=0,0,46,29;MQ=60;FQ=-250 PL 214,223,0,216,205,213
Cf746836_TGAC_s1v1_contig_1688 47690 . G A,C 211 . DP=56;AF1=1;AC1=2;DP4=0,0,30,26;MQ=60;FQ=-190 PL 244,163,0,238,125,232
Cf746836_TGAC_s1v1_contig_1688 113148 . C T,G 201 . DP=42;AF1=1;AC1=2;DP4=0,0,21,19;MQ=60;FQ=-144 PL 234,117,0,236,104,233
Cf746836_TGAC_s1v1_contig_1688 154002 . T C,A 180 . DP=43;AF1=1;AC1=2;DP4=0,0,15,25;MQ=60;FQ=-144 PL 213,117,0,209,98,206
Cf746836_TGAC_s1v1_contig_1688 165061 . G T,A 167 . DP=80;AF1=1;AC1=2;DP4=0,0,66,11;MQ=60;FQ=-256 PL 200,229,0,196,206,193
Cf746836_TGAC_s1v1_contig_1692 28925 . A G,T 214 . DP=78;AF1=1;AC1=2;DP4=0,0,37,38;MQ=60;FQ=-250 PL 247,223,0,239,197,236
Cf746836_TGAC_s1v1_contig_1698 103169 . CAAAAAAAAAA CGAAAAAAAAAA,CGGGAAAAAAAAAA,CGGAAAAAAAAAA 21.5 . INDEL;DP=30;AF1=1;AC1=2;DP4=2,1,10,13;MQ=60;FQ=-66.5;PV4=0.58,1,1,1 PL 74,44,12,32,0,30,73,53,30,70
Cf746836_TGAC_s1v1_contig_1713 22024 . T C,G 210 . DP=56;AF1=1;AC1=2;DP4=0,0,22,23;MQ=60;FQ=-159 PL 243,132,0,243,117,240
Cf746836_TGAC_s1v1_contig_1723 6868 . T A,C 195 . DP=72;AF1=1;AC1=2;DP4=0,0,37,29;MQ=60;FQ=-223 PL 228,196,0,221,170,217
Cf746836_TGAC_s1v1_contig_1723 20677 . C T,A 202 . DP=22;AF1=1;AC1=2;DP4=0,0,12,10;MQ=60;FQ=-90 PL 235,63,0,223,38,220
Cf746836_TGAC_s1v1_contig_1723 25083 . T A,G 156 . DP=48;AF1=1;AC1=2;DP4=0,0,22,22;MQ=60;FQ=-156 PL 189,129,0,184,108,181
Cf746836_TGAC_s1v1_contig_1723 29773 . T G,A 90 . DP=60;AF1=1;AC1=2;DP4=0,0,3,56;MQ=60;FQ=-199 PL 123,172,0,112,129,106
Cf746836_TGAC_s1v1_contig_1752 8777 . C T,G 77 . DP=54;AF1=1;AC1=2;DP4=0,0,48,4;MQ=60;FQ=-181 PL 110,154,0,109,135,106
Cf746836_TGAC_s1v1_contig_1752 12968 . C A,G 219 . DP=93;AF1=1;AC1=2;DP4=0,0,37,53;MQ=60;FQ=-282 PL 252,255,0,254,250,251
Cf746836_TGAC_s1v1_contig_1754 15182 . G A,T 157 . DP=62;AF1=1;AC1=2;DP4=0,0,29,29;MQ=58;FQ=-199 PL 190,172,0,190,154,187
Cf746836_TGAC_s1v1_contig_1764 11469 . T G,C 176 . DP=49;AF1=1;AC1=2;DP4=0,0,20,27;MQ=60;FQ=-165 PL 209,138,0,208,121,205
Cf746836_TGAC_s1v1_contig_1766 34203 . CTTTTTTT CTTTTTTTT,CTTTTTTTTT 129 . INDEL;DP=230;AF1=1;AC1=2;DP4=0,2,25,94;MQ=60;FQ=-290;PV4=1,1,1,1 PL 170,255,0,156,255,152
Cf746836_TGAC_s1v1_contig_1766 43546 . G T,C 145 . DP=16;AF1=1;AC1=2;DP4=0,0,4,12;MQ=58;FQ=-72 PL 178,45,0,165,20,162
Cf746836_TGAC_s1v1_contig_1766 50796 . A C,T 219 . DP=96;AF1=1;AC1=2;DP4=0,0,67,20;MQ=60;FQ=-282 PL 252,255,0,252,239,249
Cf746836_TGAC_s1v1_contig_1766 76193 . C A,T 186 . DP=180;AF1=1;AC1=2;DP4=0,0,91,69;MQ=60;FQ=-282 PL 219,255,0,219,255,216
Cf746836_TGAC_s1v1_contig_1766 77339 . G A,T 122 . DP=72;AF1=1;AC1=2;DP4=0,0,6,43;MQ=60;FQ=-171 PL 155,144,0,157,130,154
Cf746836_TGAC_s1v1_contig_1770 20828 . T C,A 181 . DP=53;AF1=1;AC1=2;DP4=0,0,21,27;MQ=60;FQ=-168 PL 214,141,0,216,126,213
Cf746836_TGAC_s1v1_contig_1770 28303 . C T,A 185 . DP=27;AF1=1;AC1=2;DP4=0,0,11,13;MQ=60;FQ=-96 PL 218,69,0,213,51,210
Cf746836_TGAC_s1v1_contig_1770 31014 . A G,C 178 . DP=57;AF1=1;AC1=2;DP4=0,0,36,19;MQ=60;FQ=-190 PL 211,163,0,213,147,210
Cf746836_TGAC_s1v1_contig_1783 2481 . G C,A 110 . DP=52;AF1=1;AC1=2;DP4=0,0,9,4;MQ=60;FQ=-63 PL 143,36,0,138,20,135
Cf746836_TGAC_s1v1_contig_1784 113 . C G,A 156 . DP=13;AF1=1;AC1=2;DP4=0,0,12,0;MQ=59;FQ=-60 PL 189,33,0,188,22,185
Cf746836_TGAC_s1v1_contig_1784 3380 . A G,T 203 . DP=50;AF1=1;AC1=2;DP4=0,0,20,23;MQ=60;FQ=-153 PL 236,126,0,235,109,232
Cf746836_TGAC_s1v1_contig_1784 5743 . T C,A 136 . DP=102;AF1=1;AC1=2;DP4=0,0,32,51;MQ=60;FQ=-274 PL 169,247,0,164,223,161
Cf746836_TGAC_s1v1_contig_1818 229180 . CTTTTTTTTTTTTTTTTT CTTTGGTTTTTTTTTTTTTTTTT,CTTTGGTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTTTT 88 . INDEL;DP=86;AF1=1;AC1=2;DP4=3,1,16,2;MQ=46;FQ=-46.5;PV4=0.47,1,0.00089,1 PL 199,83,71,116,0,116,175,69,92,172
Cf746836_TGAC_s1v1_contig_1824 167967 . A C,G 122 . DP=190;AF1=1;AC1=2;DP4=0,1,29,51;MQ=54;FQ=-246;PV4=1,0.054,0.28,1 PL 155,219,0,151,214,151
Cf746836_TGAC_s1v1_contig_1824 180392 . C T,G 214 . DP=140;AF1=1;AC1=2;DP4=0,0,77,52;MQ=60;FQ=-282 PL 247,255,0,249,255,246
Cf746836_TGAC_s1v1_contig_1824 187261 . G T,C 176 . DP=40;AF1=1;AC1=2;DP4=0,0,21,19;MQ=52;FQ=-144 PL 209,117,0,210,102,207
Cf746836_TGAC_s1v1_contig_1824 192008 . G A,T 202 . DP=100;AF1=1;AC1=2;DP4=0,0,30,50;MQ=58;FQ=-265 PL 235,238,0,232,215,229
Cf746836_TGAC_s1v1_contig_1824 193458 . A G,C 140 . DP=25;AF1=1;AC1=2;DP4=0,0,10,15;MQ=60;FQ=-99 PL 173,72,0,174,59,171
Cf746836_TGAC_s1v1_contig_1824 194199 . A G,T 95 . DP=11;AF1=1;AC1=2;DP4=0,0,5,6;MQ=60;FQ=-57 PL 128,30,0,123,15,120
Cf746836_TGAC_s1v1_contig_1824 203931 . T C,A 161 . DP=77;AF1=1;AC1=2;DP4=0,0,48,25;MQ=60;FQ=-244 PL 194,217,0,196,199,192
Cf746836_TGAC_s1v1_contig_1824 206076 . T G,A 197 . DP=129;AF1=1;AC1=2;DP4=0,0,43,81;MQ=60;FQ=-282 PL 230,255,0,232,255,229
Cf746836_TGAC_s1v1_contig_1879 79271 . C G,T 212 . DP=287;AF1=1;AC1=2;DP4=16,7,167,88;MQ=24;FQ=-282;PV4=0.82,1.2e-67,1,1 PL 245,255,0,255,255,233
Cf746836_TGAC_s1v1_contig_1881 119503 . A G,C 172 . DP=33;AF1=1;AC1=2;DP4=0,0,23,5;MQ=60;FQ=-108 PL 205,81,0,203,65,200
Cf746836_TGAC_s1v1_contig_1894 2138 . G C,T 221 . DP=225;AF1=1;AC1=2;DP4=0,0,44,169;MQ=59;FQ=-282 PL 254,255,0,255,255,252
Cf746836_TGAC_s1v1_contig_1945 12616 . AA AAAGGA,AAAAGGA 137 . INDEL;DP=68;AF1=1;AC1=2;DP4=0,0,13,5;MQ=60;FQ=-82.5 PL 209,79,31,152,0,146
Cf746836_TGAC_s1v1_contig_1997 7080 . T C,A 179 . DP=67;AF1=1;AC1=2;DP4=0,0,30,35;MQ=60;FQ=-220 PL 212,193,0,210,173,207
Cf746836_TGAC_s1v1_contig_1997 7980 . C G,A 215 . DP=56;AF1=1;AC1=2;DP4=0,0,33,16;MQ=35;FQ=-162 PL 248,135,0,241,76,229
Cf746836_TGAC_s1v1_contig_1997 8046 . C G,A 138 . DP=55;AF1=1;AC1=2;DP4=0,0,16,24;MQ=36;FQ=-111 PL 252,165,81,184,0,148
Cf746836_TGAC_s1v1_contig_2017 171155 . ATTTTTTTTT ATTTTTTTTTTTT,ATTTTTTTTTTTTT 110 . INDEL;DP=199;AF1=0.5;AC1=1;DP4=33,42,36,42;MQ=60;FQ=5.8;PV4=0.87,1,0.16,1 PL 255,107,146,255,0,214
Cf746836_TGAC_s1v1_contig_2024 16175 . C A,G 168 . DP=47;AF1=1;AC1=2;DP4=0,0,30,10;MQ=60;FQ=-144 PL 201,117,0,202,102,199
Cf746836_TGAC_s1v1_contig_2024 17223 . A T,C 204 . DP=211;AF1=1;AC1=2;DP4=0,0,112,87;MQ=60;FQ=-282 PL 237,255,0,239,255,235
Cf746836_TGAC_s1v1_contig_2025 2036 . T A,C 218 . DP=158;AF1=1;AC1=2;DP4=0,0,82,67;MQ=60;FQ=-282 PL 251,255,0,252,255,249
Cf746836_TGAC_s1v1_contig_2078 2302 . ATTTTTTTTTT ATTTTTTTTTTTT,ATTTTTTTTTTT 83.5 . INDEL;DP=19;AF1=1;AC1=2;DP4=1,0,14,4;MQ=57;FQ=-72.5;PV4=1,1,0.37,1 PL 124,38,0,125,30,122
Cf746836_TGAC_s1v1_contig_2083 40991 . C T,G 178 . DP=66;AF1=1;AC1=2;DP4=0,0,24,37;MQ=60;FQ=-208 PL 211,181,0,213,166,210
Cf746836_TGAC_s1v1_contig_2083 42078 . GAAAAAAAAAA GAAAAAAAAAAAA,GAAAAAAAAAAA,GAAAAAAAAAAAAA 47.6 . INDEL;DP=163;AF1=1;AC1=2;DP4=3,0,24,12;MQ=60;FQ=-52.5;PV4=0.54,1,1,1 PL 109,39,21,114,0,73,88,19,95,84
Cf746836_TGAC_s1v1_contig_2083 42762 . A G,T 109 . DP=115;AF1=1;AC1=2;DP4=0,0,57,45;MQ=60;FQ=-282 PL 142,255,0,144,255,141
Cf746836_TGAC_s1v1_contig_2083 53904 . CCTTCT CCCTTCTTCT,C 202 . INDEL;DP=167;AF1=1;AC1=2;DP4=0,0,49,16;MQ=60;FQ=-216 PL 255,193,12,191,0,176
Cf746836_TGAC_s1v1_contig_2089 45048 . G T,A 62 . DP=172;AF1=1;AC1=2;DP4=2,1,87,70;MQ=55;FQ=-122;PV4=1,2.9e-11,0.15,0.13 PL 255,255,160,255,0,182