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ashwellthorpe_AT2_vs_tgac1_selected.vcf
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ashwellthorpe_AT2_vs_tgac1_selected.vcf
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Cf746836_TGAC_s1v1_contig_10 3790 . A T,C 114 . DP=12;AF1=1;AC1=2;DP4=0,0,5,5;MQ=60;FQ=-54 PL 147,27,0,146,15,143
Cf746836_TGAC_s1v1_contig_10 7144 . C T,G 216 . DP=52;AF1=1;AC1=2;DP4=0,0,23,20;MQ=60;FQ=-153 PL 249,126,0,250,111,247
Cf746836_TGAC_s1v1_contig_10 21388 . C A,G 215 . DP=96;AF1=1;AC1=2;DP4=0,0,54,34;MQ=60;FQ=-282 PL 248,255,0,249,244,246
Cf746836_TGAC_s1v1_contig_19 9546 . CAAAAAAAAAA CAAAAAAAAAAAAA,CAAAAAAAAAAAAAAA,CAAAAAAAAAAAA 91.5 . INDEL;DP=16;AF1=1;AC1=2;DP4=0,0,8,3;MQ=60;FQ=-55.5 PL 224,113,92,132,0,123,217,97,119,214
Cf746836_TGAC_s1v1_contig_19 10169 . C T,G 156 . DP=54;AF1=1;AC1=2;DP4=0,0,22,27;MQ=60;FQ=-171 PL 189,144,0,190,129,187
Cf746836_TGAC_s1v1_contig_24 16413 . G A,C 163 . DP=28;AF1=1;AC1=2;DP4=0,0,12,14;MQ=60;FQ=-102 PL 196,75,0,196,62,193
Cf746836_TGAC_s1v1_contig_24 17492 . A T,C 198 . DP=24;AF1=1;AC1=2;DP4=0,0,13,9;MQ=60;FQ=-90 PL 231,63,0,232,51,229
Cf746836_TGAC_s1v1_contig_25 2796 . GGAG GG,GGGAGAG 155 . INDEL;DP=38;AF1=1;AC1=2;DP4=0,0,5,14;MQ=60;FQ=-64.5 PL 255,89,59,255,0,240
Cf746836_TGAC_s1v1_contig_36 7284 . G A,C 132 . DP=26;AF1=1;AC1=2;DP4=0,0,7,15;MQ=59;FQ=-90 PL 165,63,0,166,51,163
Cf746836_TGAC_s1v1_contig_36 7740 . C G,A 179 . DP=40;AF1=1;AC1=2;DP4=0,0,10,25;MQ=60;FQ=-129 PL 212,102,0,209,85,206
Cf746836_TGAC_s1v1_contig_36 7944 . C T,G 110 . DP=24;AF1=1;AC1=2;DP4=0,0,13,8;MQ=60;FQ=-84 PL 143,57,0,142,32,136
Cf746836_TGAC_s1v1_contig_36 8653 . CTTTTTTTT CTTTTTTTTT,CTTTTTTTTTT 64.5 . INDEL;DP=51;AF1=1;AC1=2;DP4=1,1,10,23;MQ=60;FQ=-105;PV4=0.54,1,1,0.37 PL 105,70,0,87,50,84
Cf746836_TGAC_s1v1_contig_44 5994 . C T,G 145 . DP=30;AF1=1;AC1=2;DP4=0,0,8,21;MQ=60;FQ=-111 PL 178,84,0,178,70,175
Cf746836_TGAC_s1v1_contig_60 533 . T G,C 93 . DP=14;AF1=1;AC1=2;DP4=0,0,3,9;MQ=58;FQ=-60 PL 126,33,0,117,14,114
Cf746836_TGAC_s1v1_contig_65 669 . C T,A 136 . DP=15;AF1=1;AC1=2;DP4=0,0,8,5;MQ=60;FQ=-63 PL 169,36,0,169,25,166
Cf746836_TGAC_s1v1_contig_65 7113 . C G,A 112 . DP=13;AF1=1;AC1=2;DP4=0,0,7,5;MQ=60;FQ=-60 PL 145,33,0,137,14,134
Cf746836_TGAC_s1v1_contig_65 8326 . C A,T 133 . DP=14;AF1=1;AC1=2;DP4=0,0,4,10;MQ=60;FQ=-66 PL 166,39,0,155,17,152
Cf746836_TGAC_s1v1_contig_65 8908 . C T,G 181 . DP=17;AF1=1;AC1=2;DP4=0,0,6,11;MQ=58;FQ=-75 PL 214,48,0,210,33,207
Cf746836_TGAC_s1v1_contig_65 10540 . T C,G 152 . DP=19;AF1=1;AC1=2;DP4=0,0,11,8;MQ=60;FQ=-81 PL 185,54,0,184,40,181
Cf746836_TGAC_s1v1_contig_76 1653 . C T,A 142 . DP=14;AF1=1;AC1=2;DP4=0,0,8,4;MQ=60;FQ=-60 PL 175,33,0,170,18,167
Cf746836_TGAC_s1v1_contig_76 2098 . C T,A 186 . DP=22;AF1=1;AC1=2;DP4=0,0,11,10;MQ=60;FQ=-87 PL 219,60,0,215,44,212
Cf746836_TGAC_s1v1_contig_76 16670 . AAAGA AAAGAAGA,AAGAAGA,AAAAGAAGA 196 . INDEL;DP=58;AF1=1;AC1=2;DP4=0,0,34,8;MQ=60;FQ=-131 PL 255,114,18,255,0,240,255,43,204,249
Cf746836_TGAC_s1v1_contig_76 16748 . TAGAGAGAGAGAGAGAGA TAGAGAGAGAGAGAGAGAGAGA,TAGAGAGAGAGAGAGAGAGA 172 . INDEL;DP=57;AF1=1;AC1=2;DP4=0,0,9,4;MQ=37;FQ=-70.5 PL 213,36,0,208,20,205
Cf746836_TGAC_s1v1_contig_76 20919 . T C,A 182 . DP=269;AF1=1;AC1=2;DP4=0,0,28,203;MQ=60;FQ=-282 PL 215,255,0,217,255,214
Cf746836_TGAC_s1v1_contig_79 970 . C T,G 165 . DP=17;AF1=1;AC1=2;DP4=0,0,9,5;MQ=60;FQ=-66 PL 198,39,0,197,27,194
Cf746836_TGAC_s1v1_contig_79 984 . T G,A 88 . DP=16;AF1=1;AC1=2;DP4=0,0,8,4;MQ=60;FQ=-60 PL 121,33,0,118,20,115
Cf746836_TGAC_s1v1_contig_79 1637 . C G,T 117 . DP=12;AF1=1;AC1=2;DP4=0,0,5,5;MQ=60;FQ=-54 PL 150,27,0,146,13,143
Cf746836_TGAC_s1v1_contig_89 390 . CAAAAAA CAAAAAAAA,CAAAAAAAAA 197 . INDEL;DP=36;AF1=1;AC1=2;DP4=1,0,16,6;MQ=60;FQ=-64.5;PV4=1,1,1,0.19 PL 240,32,2,200,0,215
Cf746836_TGAC_s1v1_contig_93 1930 . C G,A 173 . DP=14;AF1=1;AC1=2;DP4=0,0,4,8;MQ=60;FQ=-60 PL 208,35,2,183,0,180
Cf746836_TGAC_s1v1_contig_93 2137 . G T,C 193 . DP=12;AF1=1;AC1=2;DP4=0,0,5,5;MQ=56;FQ=-54 PL 226,27,0,224,15,221
Cf746836_TGAC_s1v1_contig_93 2623 . A G,C 158 . DP=31;AF1=1;AC1=2;DP4=0,0,17,11;MQ=60;FQ=-108 PL 191,81,0,189,65,186
Cf746836_TGAC_s1v1_contig_100 2013 . A T,G 205 . DP=49;AF1=1;AC1=2;DP4=0,0,13,26;MQ=60;FQ=-141 PL 238,114,0,234,95,231
Cf746836_TGAC_s1v1_contig_100 2331 . A G,T 222 . DP=36;AF1=1;AC1=2;DP4=0,0,18,17;MQ=60;FQ=-126 PL 255,99,0,246,72,243
Cf746836_TGAC_s1v1_contig_100 4319 . T A,C 207 . DP=41;AF1=1;AC1=2;DP4=0,0,16,22;MQ=60;FQ=-138 PL 240,111,0,242,98,239
Cf746836_TGAC_s1v1_contig_100 4337 . T C,A 194 . DP=41;AF1=1;AC1=2;DP4=0,0,17,19;MQ=60;FQ=-132 PL 227,105,0,222,85,219
Cf746836_TGAC_s1v1_contig_107 423 . T G,C 107 . DP=18;AF1=1;AC1=2;DP4=0,0,10,3;MQ=59;FQ=-63 PL 140,36,0,140,25,137
Cf746836_TGAC_s1v1_contig_125 615 . G A,C 127 . DP=20;AF1=1;AC1=2;DP4=0,0,15,2;MQ=60;FQ=-75 PL 160,48,0,155,31,152
Cf746836_TGAC_s1v1_contig_125 3713 . G A,T 152 . DP=157;AF1=1;AC1=2;DP4=0,0,55,42;MQ=60;FQ=-282 PL 185,255,0,187,255,184
Cf746836_TGAC_s1v1_contig_125 5553 . A G,T 205 . DP=99;AF1=1;AC1=2;DP4=0,0,47,49;MQ=57;FQ=-282 PL 238,255,0,240,255,237
Cf746836_TGAC_s1v1_contig_135 8538 . G A,C 116 . DP=24;AF1=1;AC1=2;DP4=0,0,7,14;MQ=60;FQ=-87 PL 149,60,0,146,44,143
Cf746836_TGAC_s1v1_contig_135 11569 . A C,G 130 . DP=19;AF1=1;AC1=2;DP4=0,0,5,13;MQ=60;FQ=-78 PL 163,51,0,163,39,160
Cf746836_TGAC_s1v1_contig_135 14354 . T A,G 194 . DP=12;AF1=1;AC1=2;DP4=0,0,6,5;MQ=58;FQ=-57 PL 227,30,0,219,12,216
Cf746836_TGAC_s1v1_contig_157 3880 . A G,C 119 . DP=29;AF1=1;AC1=2;DP4=0,0,8,14;MQ=60;FQ=-90 PL 152,63,0,153,51,150
Cf746836_TGAC_s1v1_contig_165 4763 . C T,G 216 . DP=35;AF1=1;AC1=2;DP4=0,0,14,16;MQ=60;FQ=-114 PL 249,87,0,249,73,246
Cf746836_TGAC_s1v1_contig_165 8100 . T C,A 156 . DP=17;AF1=1;AC1=2;DP4=0,0,5,11;MQ=60;FQ=-72 PL 189,45,0,189,34,186
Cf746836_TGAC_s1v1_contig_165 8338 . G A,T 86 . DP=21;AF1=1;AC1=2;DP4=0,0,17,2;MQ=60;FQ=-81 PL 119,54,0,120,42,117
Cf746836_TGAC_s1v1_contig_201 851 . C T,G 158 . DP=23;AF1=1;AC1=2;DP4=0,0,11,8;MQ=60;FQ=-81 PL 191,54,0,191,41,188
Cf746836_TGAC_s1v1_contig_201 11929 . T C,G 165 . DP=27;AF1=1;AC1=2;DP4=0,0,8,14;MQ=60;FQ=-90 PL 198,63,0,195,48,192
Cf746836_TGAC_s1v1_contig_201 13298 . CTTTTTTTTTT CTTTTTTTT,CTTTTTTTTT 40.5 . INDEL;DP=20;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-61.5 PL 81,27,0,82,18,79
Cf746836_TGAC_s1v1_contig_207 627 . G C,T 212 . DP=29;AF1=1;AC1=2;DP4=0,0,16,13;MQ=60;FQ=-111 PL 245,84,0,247,72,244
Cf746836_TGAC_s1v1_contig_213 3706 . G C,A 170 . DP=36;AF1=1;AC1=2;DP4=0,0,19,11;MQ=60;FQ=-114 PL 203,87,0,190,59,187
Cf746836_TGAC_s1v1_contig_216 41658 . C T,G 146 . DP=29;AF1=1;AC1=2;DP4=0,0,11,8;MQ=60;FQ=-81 PL 179,54,0,172,34,169
Cf746836_TGAC_s1v1_contig_237 5326 . T C,G 200 . DP=29;AF1=1;AC1=2;DP4=0,0,9,17;MQ=60;FQ=-102 PL 233,75,0,229,58,226
Cf746836_TGAC_s1v1_contig_238 1646 . GAAAAAAA GAAAAAAAA,GAAAAAAAAA 47.5 . INDEL;DP=23;AF1=1;AC1=2;DP4=0,0,2,18;MQ=60;FQ=-88.5 PL 88,54,0,62,5,56
Cf746836_TGAC_s1v1_contig_278 16434 . G A,C 116 . DP=14;AF1=1;AC1=2;DP4=0,0,11,3;MQ=60;FQ=-66 PL 149,39,0,146,25,143
Cf746836_TGAC_s1v1_contig_278 24380 . T A,C 178 . DP=55;AF1=1;AC1=2;DP4=0,0,23,27;MQ=60;FQ=-175 PL 211,148,0,203,122,200
Cf746836_TGAC_s1v1_contig_278 24754 . T C,A 194 . DP=45;AF1=1;AC1=2;DP4=0,0,21,17;MQ=59;FQ=-138 PL 227,111,0,229,98,226
Cf746836_TGAC_s1v1_contig_278 26780 . G T,A 206 . DP=39;AF1=1;AC1=2;DP4=0,0,23,12;MQ=60;FQ=-129 PL 239,102,0,237,85,234
Cf746836_TGAC_s1v1_contig_289 718 . T C,A 113 . DP=16;AF1=1;AC1=2;DP4=0,0,5,11;MQ=60;FQ=-72 PL 146,45,0,145,31,142
Cf746836_TGAC_s1v1_contig_306 13309 . C A,T 208 . DP=13;AF1=1;AC1=2;DP4=0,0,10,2;MQ=60;FQ=-60 PL 241,33,0,236,17,233
Cf746836_TGAC_s1v1_contig_313 1179 . T C,A 120 . DP=17;AF1=1;AC1=2;DP4=0,0,8,9;MQ=60;FQ=-75 PL 153,48,0,152,34,149
Cf746836_TGAC_s1v1_contig_319 2438 . T C,A 96 . DP=20;AF1=1;AC1=2;DP4=0,0,9,9;MQ=59;FQ=-78 PL 129,51,0,121,31,118
Cf746836_TGAC_s1v1_contig_320 23442 . GAAAAAAAA GAAAAAAAAAA,GAAAAAAAAAAAA,GAAAAAAAAAAA 65.5 . INDEL;DP=13;AF1=1;AC1=2;DP4=0,0,12,0;MQ=60;FQ=-64.5 PL 123,47,17,87,0,84,100,13,61,97
Cf746836_TGAC_s1v1_contig_320 25113 . G A,T 207 . DP=26;AF1=1;AC1=2;DP4=0,0,13,12;MQ=60;FQ=-99 PL 240,72,0,236,55,233
Cf746836_TGAC_s1v1_contig_344 5164 . G A,C 142 . DP=34;AF1=1;AC1=2;DP4=0,0,12,18;MQ=60;FQ=-114 PL 175,87,0,177,74,174
Cf746836_TGAC_s1v1_contig_349 808 . GAAAAA GAAAAAA,GAAAAAAA 144 . INDEL;DP=58;AF1=1;AC1=2;DP4=0,0,36,17;MQ=60;FQ=-192 PL 185,157,0,165,120,162
Cf746836_TGAC_s1v1_contig_371 2483 . GAAAAAAAA GAAAAAAAAAA,GAAAAAAAAAAA 35.9 . INDEL;DP=10;AF1=0.8294;AC1=1;DP4=1,1,6,2;MQ=60;FQ=-33.5;PV4=1,1,1,1 PL 121,49,50,68,0,73
Cf746836_TGAC_s1v1_contig_371 5793 . A G,T 137 . DP=19;AF1=1;AC1=2;DP4=0,0,7,8;MQ=60;FQ=-69 PL 170,42,0,159,20,156
Cf746836_TGAC_s1v1_contig_387 1245 . T C,A 116 . DP=17;AF1=1;AC1=2;DP4=0,0,7,7;MQ=60;FQ=-66 PL 149,39,0,149,28,146
Cf746836_TGAC_s1v1_contig_400 720 . CAAAAAAAAAAA CAAAAAAAAA,CAAAAAAAAAA 85.5 . INDEL;DP=24;AF1=1;AC1=2;DP4=0,1,8,11;MQ=60;FQ=-70.5;PV4=1,1,1,1 PL 126,36,0,129,16,121
Cf746836_TGAC_s1v1_contig_400 2181 . G A,C 199 . DP=34;AF1=1;AC1=2;DP4=0,0,7,25;MQ=60;FQ=-120 PL 232,93,0,227,73,224
Cf746836_TGAC_s1v1_contig_428 1951 . CAAAAAAAAAAAAA CAAAAAAAAAAA,CAAAAAAAAA 25.5 . INDEL;DP=31;AF1=1;AC1=2;DP4=0,1,17,1;MQ=60;FQ=-73.5;PV4=0.11,1,1,1 PL 66,39,0,51,21,48
Cf746836_TGAC_s1v1_contig_432 26661 . G T,C 183 . DP=19;AF1=1;AC1=2;DP4=0,0,9,9;MQ=60;FQ=-78 PL 216,51,0,216,38,213
Cf746836_TGAC_s1v1_contig_432 43998 . C T,G 164 . DP=44;AF1=1;AC1=2;DP4=0,0,26,16;MQ=60;FQ=-150 PL 197,123,0,195,106,192
Cf746836_TGAC_s1v1_contig_432 44542 . C T,G 170 . DP=54;AF1=1;AC1=2;DP4=0,0,24,17;MQ=60;FQ=-147 PL 203,120,0,202,103,199
Cf746836_TGAC_s1v1_contig_432 44713 . G A,T 193 . DP=44;AF1=1;AC1=2;DP4=0,0,13,29;MQ=59;FQ=-150 PL 226,123,0,228,109,225
Cf746836_TGAC_s1v1_contig_441 21358 . G A,C 193 . DP=30;AF1=1;AC1=2;DP4=0,0,12,15;MQ=60;FQ=-105 PL 226,78,0,224,62,221
Cf746836_TGAC_s1v1_contig_446 40292 . C T,A 220 . DP=39;AF1=1;AC1=2;DP4=0,0,12,20;MQ=60;FQ=-120 PL 253,93,0,241,66,238
Cf746836_TGAC_s1v1_contig_446 58618 . C G,A 167 . DP=25;AF1=1;AC1=2;DP4=0,0,13,6;MQ=60;FQ=-81 PL 200,54,0,196,37,193
Cf746836_TGAC_s1v1_contig_457 99 . T C,A 101 . DP=14;AF1=1;AC1=2;DP4=0,0,10,1;MQ=55;FQ=-57 PL 134,30,0,118,4,115
Cf746836_TGAC_s1v1_contig_457 2835 . C A,G 155 . DP=17;AF1=1;AC1=2;DP4=0,0,8,6;MQ=60;FQ=-66 PL 188,39,0,188,28,185
Cf746836_TGAC_s1v1_contig_462 16183 . G A,C 218 . DP=34;AF1=1;AC1=2;DP4=0,0,19,12;MQ=60;FQ=-117 PL 251,90,0,245,70,242
Cf746836_TGAC_s1v1_contig_470 3757 . TAAAAAAAAA TAAAAAAAAAA,TAAAAAAAAAAA 47.5 . INDEL;DP=79;AF1=1;AC1=2;DP4=1,0,23,22;MQ=60;FQ=-142;PV4=1,0.36,1,1 PL 88,107,0,62,38,51
Cf746836_TGAC_s1v1_contig_470 6604 . G A,C 155 . DP=48;AF1=1;AC1=2;DP4=0,0,23,19;MQ=60;FQ=-150 PL 188,123,0,190,109,187
Cf746836_TGAC_s1v1_contig_472 671 . G A,C 174 . DP=26;AF1=1;AC1=2;DP4=0,0,6,17;MQ=60;FQ=-93 PL 207,66,0,205,51,202
Cf746836_TGAC_s1v1_contig_474 19478 . C T,G 113 . DP=17;AF1=1;AC1=2;DP4=0,0,9,7;MQ=58;FQ=-72 PL 146,45,0,134,21,131
Cf746836_TGAC_s1v1_contig_474 29479 . C T,G 147 . DP=19;AF1=1;AC1=2;DP4=0,0,11,6;MQ=60;FQ=-75 PL 180,48,0,177,33,174
Cf746836_TGAC_s1v1_contig_474 34701 . G T,A 93 . DP=18;AF1=1;AC1=2;DP4=0,0,6,9;MQ=60;FQ=-69 PL 126,42,0,125,30,122
Cf746836_TGAC_s1v1_contig_474 36314 . G C,A 133 . DP=21;AF1=1;AC1=2;DP4=0,0,7,14;MQ=60;FQ=-87 PL 166,60,0,161,42,158
Cf746836_TGAC_s1v1_contig_474 37161 . C G,T 146 . DP=19;AF1=1;AC1=2;DP4=0,0,11,4;MQ=60;FQ=-69 PL 179,42,0,176,28,173
Cf746836_TGAC_s1v1_contig_479 11117 . C T,A 222 . DP=117;AF1=1;AC1=2;DP4=0,0,41,62;MQ=60;FQ=-282 PL 255,255,0,255,255,253
Cf746836_TGAC_s1v1_contig_479 11270 . A G,T 202 . DP=98;AF1=1;AC1=2;DP4=0,0,35,47;MQ=60;FQ=-271 PL 235,244,0,237,226,234
Cf746836_TGAC_s1v1_contig_479 12319 . C T,G 171 . DP=88;AF1=1;AC1=2;DP4=0,0,37,40;MQ=60;FQ=-256 PL 204,229,0,206,211,203
Cf746836_TGAC_s1v1_contig_479 12540 . A G,T 167 . DP=72;AF1=1;AC1=2;DP4=0,0,31,29;MQ=60;FQ=-205 PL 200,178,0,202,163,199
Cf746836_TGAC_s1v1_contig_487 11061 . C T,G 159 . DP=19;AF1=1;AC1=2;DP4=0,0,5,10;MQ=60;FQ=-69 PL 192,42,0,185,24,182
Cf746836_TGAC_s1v1_contig_487 71003 . AA AGA,AAGA 24.5 . INDEL;DP=28;AF1=1;AC1=2;DP4=0,0,12,1;MQ=60;FQ=-70.5 PL 65,36,0,50,10,47
Cf746836_TGAC_s1v1_contig_490 43292 . A G,T 178 . DP=29;AF1=1;AC1=2;DP4=0,0,11,16;MQ=60;FQ=-105 PL 211,78,0,199,52,196
Cf746836_TGAC_s1v1_contig_490 52307 . A G,T 177 . DP=34;AF1=1;AC1=2;DP4=0,0,14,14;MQ=60;FQ=-108 PL 210,81,0,207,64,204
Cf746836_TGAC_s1v1_contig_490 57930 . A G,T 205 . DP=37;AF1=1;AC1=2;DP4=0,0,15,18;MQ=60;FQ=-123 PL 238,96,0,237,79,234
Cf746836_TGAC_s1v1_contig_490 58734 . G C,A 220 . DP=51;AF1=1;AC1=2;DP4=0,0,25,22;MQ=60;FQ=-165 PL 253,138,0,249,118,246
Cf746836_TGAC_s1v1_contig_493 406 . G A,C 56 . DP=22;AF1=1;AC1=2;DP4=0,0,0,21;MQ=60;FQ=-87 PL 89,60,0,90,48,87
Cf746836_TGAC_s1v1_contig_498 41669 . T C,A 180 . DP=40;AF1=1;AC1=2;DP4=0,0,21,15;MQ=60;FQ=-132 PL 213,105,0,208,85,205
Cf746836_TGAC_s1v1_contig_506 3603 . A G,C 212 . DP=57;AF1=1;AC1=2;DP4=0,0,28,20;MQ=60;FQ=-168 PL 245,141,0,245,125,242
Cf746836_TGAC_s1v1_contig_506 3852 . C T,G 206 . DP=40;AF1=1;AC1=2;DP4=0,0,18,20;MQ=60;FQ=-138 PL 239,111,0,240,97,237
Cf746836_TGAC_s1v1_contig_506 34871 . T A,G 144 . DP=41;AF1=1;AC1=2;DP4=0,0,29,10;MQ=60;FQ=-138 PL 177,111,0,157,63,151
Cf746836_TGAC_s1v1_contig_506 40603 . T C,A 151 . DP=23;AF1=1;AC1=2;DP4=0,0,20,3;MQ=60;FQ=-93 PL 184,66,0,171,40,168
Cf746836_TGAC_s1v1_contig_506 40656 . A C,T 115 . DP=19;AF1=1;AC1=2;DP4=0,0,11,7;MQ=60;FQ=-78 PL 148,51,0,137,28,134
Cf746836_TGAC_s1v1_contig_506 46398 . G A,C 112 . DP=22;AF1=1;AC1=2;DP4=0,0,9,11;MQ=60;FQ=-84 PL 145,57,0,136,36,133
Cf746836_TGAC_s1v1_contig_506 49857 . G A,C 97 . DP=11;AF1=1;AC1=2;DP4=0,0,2,9;MQ=60;FQ=-57 PL 130,30,0,126,16,123
Cf746836_TGAC_s1v1_contig_510 12905 . C T,A 167 . DP=23;AF1=1;AC1=2;DP4=0,0,12,10;MQ=60;FQ=-90 PL 200,63,0,193,43,190
Cf746836_TGAC_s1v1_contig_525 13527 . GTTTTTTTT GTTTTTTTTTT,GTTTTTTTTT 144 . INDEL;DP=14;AF1=1;AC1=2;DP4=0,0,6,7;MQ=60;FQ=-70.5 PL 185,36,0,185,26,182
Cf746836_TGAC_s1v1_contig_529 36320 . C T,A 53 . DP=41;AF1=1;AC1=2;DP4=0,2,35,0;MQ=21;FQ=-107;PV4=0.0015,1,0.03,1 PL 86,80,0,73,73,69
Cf746836_TGAC_s1v1_contig_529 36346 . G A,T 37 . DP=32;AF1=1;AC1=2;DP4=0,0,22,4;MQ=20;FQ=-102 PL 70,75,0,71,62,68
Cf746836_TGAC_s1v1_contig_534 1705 . C T,G 190 . DP=24;AF1=1;AC1=2;DP4=0,0,13,7;MQ=60;FQ=-84 PL 223,57,0,219,40,216
Cf746836_TGAC_s1v1_contig_534 1805 . T C,A 172 . DP=27;AF1=1;AC1=2;DP4=0,0,14,13;MQ=59;FQ=-105 PL 205,78,0,206,65,203
Cf746836_TGAC_s1v1_contig_534 2716 . G T,C 68 . DP=23;AF1=1;AC1=2;DP4=0,0,1,16;MQ=58;FQ=-75 PL 101,48,0,96,31,93
Cf746836_TGAC_s1v1_contig_536 7773 . C T,A 147 . DP=22;AF1=1;AC1=2;DP4=0,0,10,12;MQ=60;FQ=-90 PL 180,63,0,178,48,175
Cf746836_TGAC_s1v1_contig_543 1967 . CTTTTTTTTTTTT CTTTTTTTTT,CTTTTTTTTTT,CTTTTTTTT 212 . INDEL;DP=71;AF1=1;AC1=2;DP4=0,0,17,37;MQ=60;FQ=-167 PL 253,132,0,240,31,216,228,77,198,222
Cf746836_TGAC_s1v1_contig_550 16415 . G C,A 166 . DP=74;AF1=1;AC1=2;DP4=0,0,34,26;MQ=60;FQ=-205 PL 199,178,0,201,162,198
Cf746836_TGAC_s1v1_contig_584 23751 . G A,C 208 . DP=32;AF1=1;AC1=2;DP4=0,0,21,10;MQ=60;FQ=-117 PL 241,90,0,239,73,236
Cf746836_TGAC_s1v1_contig_584 29023 . G A,C 79 . DP=20;AF1=1;AC1=2;DP4=0,0,9,3;MQ=60;FQ=-60 PL 112,33,0,112,22,109
Cf746836_TGAC_s1v1_contig_584 29836 . G A,C 175 . DP=25;AF1=1;AC1=2;DP4=0,0,12,10;MQ=60;FQ=-90 PL 208,63,0,201,43,198
Cf746836_TGAC_s1v1_contig_584 30385 . T G,C 142 . DP=18;AF1=1;AC1=2;DP4=0,0,9,8;MQ=60;FQ=-75 PL 175,48,0,165,26,162
Cf746836_TGAC_s1v1_contig_587 122896 . C T,G 222 . DP=50;AF1=1;AC1=2;DP4=0,0,17,30;MQ=60;FQ=-165 PL 255,138,0,251,114,248
Cf746836_TGAC_s1v1_contig_587 123594 . C T,G 201 . DP=35;AF1=1;AC1=2;DP4=0,0,17,13;MQ=60;FQ=-114 PL 234,87,0,234,73,231
Cf746836_TGAC_s1v1_contig_587 123890 . C T,A 149 . DP=59;AF1=1;AC1=2;DP4=0,0,23,28;MQ=60;FQ=-178 PL 182,151,0,184,136,181
Cf746836_TGAC_s1v1_contig_602 29830 . C A,G 216 . DP=31;AF1=1;AC1=2;DP4=0,0,9,19;MQ=60;FQ=-108 PL 249,81,0,246,64,243
Cf746836_TGAC_s1v1_contig_602 30118 . C T,G,A 204 . DP=34;AF1=1;AC1=2;DP4=0,0,15,16;MQ=60;FQ=-114 PL 237,87,0,238,74,235,239,75,237,236
Cf746836_TGAC_s1v1_contig_614 23502 . A C,G 222 . DP=74;AF1=1;AC1=2;DP4=0,0,51,19;MQ=58;FQ=-235 PL 255,208,0,246,179,243
Cf746836_TGAC_s1v1_contig_614 26495 . C T,A 222 . DP=110;AF1=1;AC1=2;DP4=0,0,58,43;MQ=60;FQ=-282 PL 255,255,0,255,255,254
Cf746836_TGAC_s1v1_contig_614 26796 . G C,A 63 . DP=15;AF1=1;AC1=2;DP4=0,0,0,13;MQ=60;FQ=-63 PL 96,36,0,89,18,86
Cf746836_TGAC_s1v1_contig_614 67276 . A G,C 101 . DP=17;AF1=1;AC1=2;DP4=0,0,6,10;MQ=57;FQ=-72 PL 134,45,0,135,34,132
Cf746836_TGAC_s1v1_contig_614 67398 . C G,T 121 . DP=36;AF1=1;AC1=2;DP4=0,0,7,26;MQ=60;FQ=-123 PL 154,96,0,148,75,145
Cf746836_TGAC_s1v1_contig_626 7479 . TTT TTTATT,TATT 180 . INDEL;DP=29;AF1=1;AC1=2;DP4=0,1,3,18;MQ=60;FQ=-72.5;PV4=1,1,1,0.28 PL 221,38,0,221,10,211
Cf746836_TGAC_s1v1_contig_642 30014 . C T,A 205 . DP=72;AF1=1;AC1=2;DP4=0,0,27,39;MQ=60;FQ=-223 PL 238,196,0,233,173,230
Cf746836_TGAC_s1v1_contig_642 31013 . G A,T 152 . DP=18;AF1=1;AC1=2;DP4=0,0,10,6;MQ=60;FQ=-72 PL 185,45,0,179,27,176
Cf746836_TGAC_s1v1_contig_642 31073 . A G,T 111 . DP=24;AF1=1;AC1=2;DP4=0,0,4,15;MQ=60;FQ=-81 PL 144,54,0,139,37,136
Cf746836_TGAC_s1v1_contig_642 31820 . C T,G 195 . DP=55;AF1=1;AC1=2;DP4=0,0,25,28;MQ=60;FQ=-184 PL 228,157,0,229,140,226
Cf746836_TGAC_s1v1_contig_642 61180 . G A,T 211 . DP=45;AF1=1;AC1=2;DP4=0,0,22,19;MQ=60;FQ=-147 PL 244,120,0,241,101,238
Cf746836_TGAC_s1v1_contig_642 68683 . G C,T 147 . DP=12;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-57 PL 180,30,0,171,11,168
Cf746836_TGAC_s1v1_contig_686 41995 . A C,G 170 . DP=72;AF1=1;AC1=2;DP4=0,0,24,37;MQ=60;FQ=-208 PL 203,181,0,205,165,202
Cf746836_TGAC_s1v1_contig_686 44599 . T C,A 200 . DP=38;AF1=1;AC1=2;DP4=0,0,18,15;MQ=60;FQ=-123 PL 233,96,0,235,83,232
Cf746836_TGAC_s1v1_contig_686 59547 . C T,A 167 . DP=88;AF1=1;AC1=2;DP4=0,0,46,34;MQ=60;FQ=-265 PL 200,238,0,182,201,179
Cf746836_TGAC_s1v1_contig_686 61051 . A G,T 201 . DP=69;AF1=1;AC1=2;DP4=0,0,19,40;MQ=60;FQ=-202 PL 234,175,0,235,158,232
Cf746836_TGAC_s1v1_contig_686 61599 . C T,G 168 . DP=76;AF1=1;AC1=2;DP4=0,0,39,35;MQ=59;FQ=-247 PL 201,220,0,199,199,196
Cf746836_TGAC_s1v1_contig_692 3055 . C T,G 169 . DP=24;AF1=1;AC1=2;DP4=0,0,8,12;MQ=59;FQ=-84 PL 202,57,0,196,38,193
Cf746836_TGAC_s1v1_contig_692 8435 . C T,G 69 . DP=11;AF1=1;AC1=2;DP4=0,0,4,6;MQ=60;FQ=-54 PL 102,27,0,98,13,95
Cf746836_TGAC_s1v1_contig_695 22971 . G A,C 117 . DP=11;AF1=1;AC1=2;DP4=0,0,6,4;MQ=60;FQ=-54 PL 150,27,0,146,13,143
Cf746836_TGAC_s1v1_contig_698 40691 . C G,A 153 . DP=62;AF1=1;AC1=2;DP4=0,0,29,30;MQ=60;FQ=-202 PL 186,175,0,179,150,176
Cf746836_TGAC_s1v1_contig_727 2425 . A G,T 143 . DP=27;AF1=1;AC1=2;DP4=0,0,12,13;MQ=60;FQ=-99 PL 176,72,0,173,55,170
Cf746836_TGAC_s1v1_contig_728 68877 . A G,T 178 . DP=24;AF1=1;AC1=2;DP4=0,0,11,10;MQ=57;FQ=-87 PL 211,60,0,209,45,206
Cf746836_TGAC_s1v1_contig_736 29129 . G A,T 130 . DP=22;AF1=1;AC1=2;DP4=0,0,5,14;MQ=60;FQ=-81 PL 163,54,0,157,36,154
Cf746836_TGAC_s1v1_contig_743 3101 . G A,T 82 . DP=19;AF1=1;AC1=2;DP4=0,0,1,15;MQ=60;FQ=-72 PL 115,45,0,116,34,113
Cf746836_TGAC_s1v1_contig_743 3975 . T C,G 123 . DP=15;AF1=1;AC1=2;DP4=0,0,6,9;MQ=60;FQ=-69 PL 156,42,0,150,24,147
Cf746836_TGAC_s1v1_contig_743 4273 . G A,T 116 . DP=20;AF1=1;AC1=2;DP4=0,0,5,14;MQ=60;FQ=-81 PL 149,54,0,148,40,145
Cf746836_TGAC_s1v1_contig_752 65881 . T C,G 172 . DP=28;AF1=1;AC1=2;DP4=0,0,15,12;MQ=59;FQ=-105 PL 205,78,0,199,59,196
Cf746836_TGAC_s1v1_contig_752 97050 . G A,C 73 . DP=14;AF1=1;AC1=2;DP4=0,0,8,3;MQ=60;FQ=-57 PL 106,30,0,98,12,95
Cf746836_TGAC_s1v1_contig_752 98736 . CTTTTTTTTTTTT CTTTTTTTTTT,CTTTTTTTTTTT,CTTTTTTTTTTTTT 51.5 . INDEL;DP=15;AF1=1;AC1=2;DP4=0,0,8,3;MQ=60;FQ=-61.5 PL 92,27,0,94,19,91,94,19,94,91
Cf746836_TGAC_s1v1_contig_758 11763 . TTTT TTTTCATTT,TTTCATTT 206 . INDEL;DP=19;AF1=1;AC1=2;DP4=0,0,14,0;MQ=60;FQ=-73.5 PL 255,47,8,234,0,231
Cf746836_TGAC_s1v1_contig_772 26669 . A G,T 128 . DP=14;AF1=1;AC1=2;DP4=0,0,6,5;MQ=60;FQ=-57 PL 161,30,0,156,15,153
Cf746836_TGAC_s1v1_contig_772 28162 . C T,A 222 . DP=64;AF1=1;AC1=2;DP4=0,0,31,25;MQ=60;FQ=-193 PL 255,166,0,254,143,251
Cf746836_TGAC_s1v1_contig_774 17107 . C T,G 176 . DP=20;AF1=1;AC1=2;DP4=0,0,11,9;MQ=60;FQ=-84 PL 209,57,0,206,41,203
Cf746836_TGAC_s1v1_contig_780 19593 . G A,C 195 . DP=23;AF1=1;AC1=2;DP4=0,0,13,6;MQ=60;FQ=-81 PL 228,54,0,227,41,224
Cf746836_TGAC_s1v1_contig_790 729 . T G,A 150 . DP=20;AF1=1;AC1=2;DP4=0,0,14,5;MQ=60;FQ=-81 PL 183,54,0,184,42,181
Cf746836_TGAC_s1v1_contig_790 1497 . A G,T 192 . DP=29;AF1=1;AC1=2;DP4=0,0,9,17;MQ=60;FQ=-102 PL 225,75,0,213,49,210
Cf746836_TGAC_s1v1_contig_790 5709 . T C,G 173 . DP=31;AF1=1;AC1=2;DP4=0,0,12,16;MQ=60;FQ=-108 PL 206,81,0,201,62,198
Cf746836_TGAC_s1v1_contig_790 128483 . A G,T 128 . DP=16;AF1=1;AC1=2;DP4=0,0,7,8;MQ=57;FQ=-69 PL 161,42,0,156,25,153
Cf746836_TGAC_s1v1_contig_790 129385 . T C,A 184 . DP=24;AF1=1;AC1=2;DP4=0,0,15,8;MQ=60;FQ=-93 PL 217,66,0,218,53,215
Cf746836_TGAC_s1v1_contig_793 539 . G C,T 211 . DP=44;AF1=1;AC1=2;DP4=0,0,20,16;MQ=60;FQ=-132 PL 244,105,0,244,89,241
Cf746836_TGAC_s1v1_contig_793 1346 . C T,A 176 . DP=27;AF1=1;AC1=2;DP4=0,0,14,11;MQ=60;FQ=-99 PL 209,72,0,211,59,207
Cf746836_TGAC_s1v1_contig_810 1067 . CAAAAAAAAAAAA CAAAAAAAAAAAAAA,CAAAAAAAAAAAAA,CAAAAAAAAAAAAAAA 28.5 . INDEL;DP=108;AF1=1;AC1=2;DP4=3,4,42,13;MQ=60;FQ=-55.5;PV4=0.082,1,1,1 PL 69,21,0,102,3,55,62,25,115,51
Cf746836_TGAC_s1v1_contig_812 4763 . G A,C 195 . DP=33;AF1=1;AC1=2;DP4=0,0,14,15;MQ=60;FQ=-111 PL 228,84,0,227,68,224
Cf746836_TGAC_s1v1_contig_812 5750 . G A,C 181 . DP=37;AF1=1;AC1=2;DP4=0,0,15,19;MQ=60;FQ=-126 PL 214,99,0,216,85,213
Cf746836_TGAC_s1v1_contig_814 36197 . CTT CTTT,CCTTT 114 . INDEL;DP=14;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-61.5 PL 176,48,21,138,0,135
Cf746836_TGAC_s1v1_contig_817 10343 . G A,T 161 . DP=16;AF1=1;AC1=2;DP4=0,0,8,7;MQ=60;FQ=-69 PL 194,42,0,194,30,191
Cf746836_TGAC_s1v1_contig_817 34825 . C G,T 74 . DP=11;AF1=1;AC1=2;DP4=0,0,5,5;MQ=60;FQ=-54 PL 107,27,0,106,15,103
Cf746836_TGAC_s1v1_contig_817 42339 . A T,G 145 . DP=31;AF1=1;AC1=2;DP4=0,0,14,11;MQ=60;FQ=-99 PL 178,72,0,178,59,175
Cf746836_TGAC_s1v1_contig_819 7993 . C T,A 112 . DP=12;AF1=1;AC1=2;DP4=0,0,4,8;MQ=60;FQ=-60 PL 145,33,0,143,20,140
Cf746836_TGAC_s1v1_contig_827 88448 . C T,G 192 . DP=24;AF1=1;AC1=2;DP4=0,0,12,12;MQ=54;FQ=-96 PL 225,69,0,214,44,211
Cf746836_TGAC_s1v1_contig_827 101123 . T C,A 102 . DP=18;AF1=1;AC1=2;DP4=0,0,3,14;MQ=56;FQ=-75 PL 135,48,0,129,30,126
Cf746836_TGAC_s1v1_contig_827 101498 . C T,G 120 . DP=25;AF1=1;AC1=2;DP4=0,0,14,10;MQ=60;FQ=-96 PL 153,69,0,151,53,148
Cf746836_TGAC_s1v1_contig_831 23745 . A C,T 186 . DP=26;AF1=1;AC1=2;DP4=0,0,7,17;MQ=60;FQ=-96 PL 219,69,0,220,57,217
Cf746836_TGAC_s1v1_contig_831 24120 . G A,T 157 . DP=20;AF1=1;AC1=2;DP4=0,0,9,9;MQ=60;FQ=-78 PL 190,51,0,189,37,186
Cf746836_TGAC_s1v1_contig_831 24440 . C A,G 147 . DP=32;AF1=1;AC1=2;DP4=0,0,13,14;MQ=60;FQ=-105 PL 180,78,0,178,62,175
Cf746836_TGAC_s1v1_contig_832 56821 . G T,C 93 . DP=12;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-54 PL 126,27,0,125,16,122
Cf746836_TGAC_s1v1_contig_832 57060 . G A,C 84 . DP=11;AF1=1;AC1=2;DP4=0,0,5,5;MQ=60;FQ=-54 PL 117,27,0,111,11,108
Cf746836_TGAC_s1v1_contig_838 8074 . G A,T 145 . DP=15;AF1=1;AC1=2;DP4=0,0,9,4;MQ=60;FQ=-63 PL 178,36,0,175,22,172
Cf746836_TGAC_s1v1_contig_844 14085 . C T,G 205 . DP=42;AF1=1;AC1=2;DP4=0,0,19,19;MQ=60;FQ=-138 PL 238,111,0,238,96,235
Cf746836_TGAC_s1v1_contig_867 41706 . A G,T 174 . DP=30;AF1=1;AC1=2;DP4=0,0,8,13;MQ=60;FQ=-87 PL 207,60,0,208,48,205
Cf746836_TGAC_s1v1_contig_867 59166 . T G,A 185 . DP=46;AF1=1;AC1=2;DP4=0,0,12,29;MQ=60;FQ=-147 PL 218,120,0,212,98,209
Cf746836_TGAC_s1v1_contig_873 80641 . T A,G 150 . DP=32;AF1=1;AC1=2;DP4=0,0,6,21;MQ=60;FQ=-105 PL 183,78,0,184,65,181
Cf746836_TGAC_s1v1_contig_873 80940 . G C,A 90 . DP=18;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-57 PL 123,30,0,115,11,112
Cf746836_TGAC_s1v1_contig_878 11048 . C T,A 197 . DP=23;AF1=1;AC1=2;DP4=0,0,9,11;MQ=60;FQ=-84 PL 230,57,0,231,45,228
Cf746836_TGAC_s1v1_contig_878 11761 . G A,T 87 . DP=33;AF1=1;AC1=2;DP4=0,0,1,28;MQ=60;FQ=-111 PL 120,84,0,120,70,117
Cf746836_TGAC_s1v1_contig_878 12327 . C T,A 208 . DP=99;AF1=1;AC1=2;DP4=0,0,68,24;MQ=60;FQ=-282 PL 241,255,0,243,255,240
Cf746836_TGAC_s1v1_contig_878 20833 . A C,G 215 . DP=221;AF1=1;AC1=2;DP4=0,0,81,102;MQ=60;FQ=-282 PL 248,255,0,235,255,232
Cf746836_TGAC_s1v1_contig_878 44170 . G A,T 81 . DP=11;AF1=1;AC1=2;DP4=0,0,5,6;MQ=60;FQ=-57 PL 114,30,0,102,8,99
Cf746836_TGAC_s1v1_contig_888 11664 . C A,G 206 . DP=102;AF1=1;AC1=2;DP4=0,0,44,50;MQ=60;FQ=-282 PL 239,255,0,241,255,238
Cf746836_TGAC_s1v1_contig_888 13280 . C T,G 210 . DP=79;AF1=1;AC1=2;DP4=0,0,34,36;MQ=60;FQ=-235 PL 243,208,0,245,191,242
Cf746836_TGAC_s1v1_contig_906 9311 . A C,T 111 . DP=19;AF1=1;AC1=2;DP4=0,0,2,17;MQ=58;FQ=-81 PL 144,54,0,143,40,140
Cf746836_TGAC_s1v1_contig_907 41808 . G A,C 212 . DP=60;AF1=1;AC1=2;DP4=0,0,30,28;MQ=57;FQ=-199 PL 245,172,0,247,157,244
Cf746836_TGAC_s1v1_contig_907 57788 . C T,A 192 . DP=57;AF1=1;AC1=2;DP4=0,0,21,29;MQ=60;FQ=-175 PL 225,148,0,222,128,219
Cf746836_TGAC_s1v1_contig_915 12346 . T C,A 141 . DP=62;AF1=1;AC1=2;DP4=0,0,27,25;MQ=60;FQ=-181 PL 174,154,0,167,129,164
Cf746836_TGAC_s1v1_contig_915 13567 . T G,C 166 . DP=33;AF1=1;AC1=2;DP4=0,0,18,11;MQ=60;FQ=-111 PL 199,84,0,198,68,195
Cf746836_TGAC_s1v1_contig_915 23107 . GTTTTTT GTTTTTTT,GTTTTTTTT 69.5 . INDEL;DP=16;AF1=1;AC1=2;DP4=0,0,8,5;MQ=60;FQ=-70.5 PL 110,36,0,91,6,88
Cf746836_TGAC_s1v1_contig_915 26891 . CTTTTTTTTTTT CTTTTTTTTT,CTTTTTTT 113 . INDEL;DP=47;AF1=1;AC1=2;DP4=0,0,6,20;MQ=60;FQ=-107 PL 154,72,0,136,39,132
Cf746836_TGAC_s1v1_contig_932 4309 . ACCCCC ACCCCCC,AACCCCCC 82.5 . INDEL;DP=33;AF1=1;AC1=2;DP4=0,0,27,3;MQ=60;FQ=-119 PL 123,84,0,80,15,74
Cf746836_TGAC_s1v1_contig_932 32595 . T C,A 206 . DP=15;AF1=1;AC1=2;DP4=0,0,2,11;MQ=58;FQ=-63 PL 239,36,0,236,22,233
Cf746836_TGAC_s1v1_contig_937 20797 . G A,C 185 . DP=22;AF1=1;AC1=2;DP4=0,0,11,8;MQ=60;FQ=-81 PL 218,54,0,216,39,213
Cf746836_TGAC_s1v1_contig_949 24749 . C A,G 197 . DP=40;AF1=1;AC1=2;DP4=0,0,23,14;MQ=59;FQ=-135 PL 230,108,0,221,84,218
Cf746836_TGAC_s1v1_contig_950 68451 . G T,C 140 . DP=51;AF1=1;AC1=2;DP4=0,0,35,9;MQ=60;FQ=-156 PL 173,129,0,170,110,167
Cf746836_TGAC_s1v1_contig_950 72567 . G A,C 158 . DP=25;AF1=1;AC1=2;DP4=0,0,14,9;MQ=59;FQ=-93 PL 191,66,0,192,54,189
Cf746836_TGAC_s1v1_contig_950 82842 . C T,G 90 . DP=31;AF1=1;AC1=2;DP4=0,0,0,28;MQ=60;FQ=-108 PL 123,81,0,125,69,122
Cf746836_TGAC_s1v1_contig_950 85753 . T C,A 178 . DP=32;AF1=1;AC1=2;DP4=0,0,15,15;MQ=60;FQ=-114 PL 211,87,0,213,74,210
Cf746836_TGAC_s1v1_contig_953 204 . C T,A 151 . DP=27;AF1=1;AC1=2;DP4=0,0,12,12;MQ=59;FQ=-96 PL 184,69,0,178,49,175
Cf746836_TGAC_s1v1_contig_953 207 . C T,A 156 . DP=27;AF1=1;AC1=2;DP4=0,0,12,12;MQ=59;FQ=-96 PL 189,69,0,189,55,186
Cf746836_TGAC_s1v1_contig_965 56664 . T A,C 207 . DP=71;AF1=1;AC1=2;DP4=0,1,37,23;MQ=60;FQ=-188;PV4=0.39,1,1,1 PL 240,161,0,234,153,233
Cf746836_TGAC_s1v1_contig_966 15554 . C T,G 159 . DP=35;AF1=1;AC1=2;DP4=0,0,23,5;MQ=60;FQ=-108 PL 192,81,0,194,69,191
Cf746836_TGAC_s1v1_contig_966 16134 . C T,A 209 . DP=46;AF1=1;AC1=2;DP4=0,0,25,19;MQ=59;FQ=-156 PL 242,129,0,241,112,238
Cf746836_TGAC_s1v1_contig_972 94078 . GTTTTTTTTTTT GTTTTTTTTT,GTTTTTTTTTT 81.5 . INDEL;DP=14;AF1=1;AC1=2;DP4=0,0,5,7;MQ=60;FQ=-67.5 PL 122,33,0,124,24,121
Cf746836_TGAC_s1v1_contig_972 94257 . A G,T 114 . DP=20;AF1=1;AC1=2;DP4=0,0,10,8;MQ=60;FQ=-78 PL 147,51,0,148,39,145
Cf746836_TGAC_s1v1_contig_972 100145 . C T,G 112 . DP=12;AF1=1;AC1=2;DP4=0,0,4,6;MQ=60;FQ=-54 PL 145,27,0,141,13,138
Cf746836_TGAC_s1v1_contig_988 44097 . A G,T 187 . DP=22;AF1=1;AC1=2;DP4=0,0,9,11;MQ=60;FQ=-84 PL 220,57,0,212,36,209
Cf746836_TGAC_s1v1_contig_996 4132 . CTTTTTTTT CTTTTTTTTT,CTTTTTTTTTT 38.5 . INDEL;DP=65;AF1=1;AC1=2;DP4=2,2,23,13;MQ=60;FQ=-94.5;PV4=0.62,1,1,0.15 PL 79,60,0,65,60,64
Cf746836_TGAC_s1v1_contig_998 11754 . GAAAAAAAA GAAAAAAAAAA,GAAAAAAAAAAAAA,GAAAAAAAAAAAA 137 . INDEL;DP=30;AF1=1;AC1=2;DP4=0,0,3,16;MQ=60;FQ=-85.5 PL 184,57,6,140,0,137,150,10,103,147
Cf746836_TGAC_s1v1_contig_998 12930 . G A,C 133 . DP=47;AF1=1;AC1=2;DP4=0,0,17,25;MQ=60;FQ=-150 PL 166,123,0,166,107,163
Cf746836_TGAC_s1v1_contig_1002 26685 . T C,G 142 . DP=12;AF1=1;AC1=2;DP4=0,0,6,6;MQ=60;FQ=-60 PL 175,33,0,170,18,167
Cf746836_TGAC_s1v1_contig_1015 56705 . G A,T 144 . DP=22;AF1=1;AC1=2;DP4=0,0,16,6;MQ=60;FQ=-90 PL 177,63,0,172,44,169
Cf746836_TGAC_s1v1_contig_1015 58141 . C G,T 221 . DP=55;AF1=1;AC1=2;DP4=0,0,19,28;MQ=59;FQ=-165 PL 254,138,0,251,119,248
Cf746836_TGAC_s1v1_contig_1015 61988 . T G,C 127 . DP=73;AF1=1;AC1=2;DP4=0,0,13,22;MQ=60;FQ=-129 PL 160,102,0,160,87,157
Cf746836_TGAC_s1v1_contig_1038 784 . T C,A 117 . DP=19;AF1=1;AC1=2;DP4=0,0,17,1;MQ=58;FQ=-78 PL 150,51,0,142,30,139
Cf746836_TGAC_s1v1_contig_1038 1199 . C T,G 160 . DP=39;AF1=1;AC1=2;DP4=0,0,18,16;MQ=58;FQ=-126 PL 193,99,0,195,86,192
Cf746836_TGAC_s1v1_contig_1045 12677 . T C,G 135 . DP=14;AF1=1;AC1=2;DP4=0,0,8,5;MQ=60;FQ=-63 PL 168,36,0,164,21,161
Cf746836_TGAC_s1v1_contig_1088 33462 . G T,A 60.1 . DP=49;AF1=1;AC1=2;DP4=2,2,4,37;MQ=35;FQ=-47;PV4=0.08,3.2e-05,1,0.33 PL 105,32,12,51,0,89
Cf746836_TGAC_s1v1_contig_1117 40662 . A G,C 222 . DP=45;AF1=1;AC1=2;DP4=0,0,24,18;MQ=60;FQ=-150 PL 255,123,0,251,99,248
Cf746836_TGAC_s1v1_contig_1119 1759 . C T,G 209 . DP=26;AF1=1;AC1=2;DP4=0,0,14,9;MQ=60;FQ=-93 PL 242,66,0,241,51,238
Cf746836_TGAC_s1v1_contig_1119 3605 . T C,A 217 . DP=13;AF1=1;AC1=2;DP4=0,0,4,7;MQ=60;FQ=-57 PL 250,30,0,248,17,245
Cf746836_TGAC_s1v1_contig_1136 1987 . C G,A 131 . DP=211;AF1=1;AC1=2;DP4=0,0,15,8;MQ=60;FQ=-93 PL 164,66,0,158,46,155
Cf746836_TGAC_s1v1_contig_1136 1991 . TGG TG,T 214 . INDEL;DP=185;AF1=1;AC1=2;DP4=0,0,77,66;MQ=60;FQ=-290 PL 255,255,0,239,255,230
Cf746836_TGAC_s1v1_contig_1137 94342 . ATTTTTTTTT ATTTTTTTTTTT,ATTTTTTTTTTTT 75.5 . INDEL;DP=49;AF1=1;AC1=2;DP4=0,8,3,30;MQ=60;FQ=-54.5;PV4=1,1,1,0.27 PL 196,100,80,92,0,93
Cf746836_TGAC_s1v1_contig_1139 18188 . CTTTTTTTTTT CTTTTTTTTT,CTTTTTTTT 21.5 . INDEL;DP=23;AF1=1;AC1=2;DP4=0,0,3,16;MQ=60;FQ=-82.5 PL 62,48,0,46,2,37
Cf746836_TGAC_s1v1_contig_1146 1057 . G A,C 186 . DP=37;AF1=1;AC1=2;DP4=0,0,20,13;MQ=60;FQ=-123 PL 219,96,0,218,80,215
Cf746836_TGAC_s1v1_contig_1162 2252 . T C,G 140 . DP=21;AF1=1;AC1=2;DP4=0,0,9,10;MQ=60;FQ=-81 PL 173,54,0,170,39,167
Cf746836_TGAC_s1v1_contig_1162 25541 . CTTTTT CTTTTTT,CCATTTTTTT 130 . INDEL;DP=53;AF1=1;AC1=2;DP4=3,0,22,16;MQ=60;FQ=-97.5;PV4=0.27,1,1,1 PL 171,63,0,137,58,148
Cf746836_TGAC_s1v1_contig_1165 38068 . A T,G 155 . DP=89;AF1=1;AC1=2;DP4=0,0,41,41;MQ=60;FQ=-271 PL 188,244,0,190,227,187
Cf746836_TGAC_s1v1_contig_1165 38200 . A G,C 191 . DP=60;AF1=1;AC1=2;DP4=0,0,26,34;MQ=60;FQ=-205 PL 224,178,0,225,162,222
Cf746836_TGAC_s1v1_contig_1165 38594 . T C,A 91 . DP=52;AF1=1;AC1=2;DP4=0,0,7,4;MQ=60;FQ=-57 PL 124,30,0,123,19,120
Cf746836_TGAC_s1v1_contig_1165 43566 . G A,C 119 . DP=13;AF1=1;AC1=2;DP4=0,0,8,5;MQ=59;FQ=-63 PL 152,36,0,128,1,125
Cf746836_TGAC_s1v1_contig_1179 2422 . T C,A 91 . DP=18;AF1=1;AC1=2;DP4=0,0,9,6;MQ=60;FQ=-69 PL 124,42,0,122,28,119
Cf746836_TGAC_s1v1_contig_1182 26788 . A T,G 179 . DP=19;AF1=1;AC1=2;DP4=0,0,9,9;MQ=49;FQ=-78 PL 212,51,0,211,37,208
Cf746836_TGAC_s1v1_contig_1184 1471 . T A,C 160 . DP=36;AF1=1;AC1=2;DP4=0,0,15,15;MQ=60;FQ=-114 PL 193,87,0,195,74,192
Cf746836_TGAC_s1v1_contig_1185 12154 . A T,C 179 . DP=37;AF1=1;AC1=2;DP4=0,0,32,5;MQ=60;FQ=-135 PL 212,108,0,214,95,211
Cf746836_TGAC_s1v1_contig_1206 55242 . A G,C 194 . DP=23;AF1=1;AC1=2;DP4=0,0,15,8;MQ=60;FQ=-93 PL 227,66,0,228,53,225
Cf746836_TGAC_s1v1_contig_1241 331 . GAAAAAAA GAAAAAAAA,GAAAAAAAAA 55.5 . INDEL;DP=34;AF1=1;AC1=2;DP4=0,0,20,6;MQ=60;FQ=-107 PL 96,72,0,72,23,66
Cf746836_TGAC_s1v1_contig_1241 573 . GAAAAAAAA GAAAAAAAAA,GAAAAAAAAAA 45.5 . INDEL;DP=56;AF1=1;AC1=2;DP4=0,0,10,9;MQ=60;FQ=-82.5 PL 96,58,10,68,0,58
Cf746836_TGAC_s1v1_contig_1241 3411 . GAAAAAAAAAA GAAAAAAAAA,GAAAAAAA,GAAAAAAAA 39.5 . INDEL;DP=32;AF1=1;AC1=2;DP4=0,0,11,11;MQ=60;FQ=-94.5 PL 80,60,0,67,33,64,76,43,60,73
Cf746836_TGAC_s1v1_contig_1241 3458 . T G,C 86 . DP=26;AF1=1;AC1=2;DP4=0,0,5,8;MQ=60;FQ=-63 PL 119,36,0,119,25,116
Cf746836_TGAC_s1v1_contig_1241 8203 . G A,C 199 . DP=57;AF1=1;AC1=2;DP4=0,0,29,25;MQ=60;FQ=-187 PL 232,160,0,225,135,222
Cf746836_TGAC_s1v1_contig_1241 9674 . T C,G 117 . DP=37;AF1=1;AC1=2;DP4=0,0,28,7;MQ=51;FQ=-129 PL 150,102,0,152,88,149
Cf746836_TGAC_s1v1_contig_1241 11236 . C T,G 110 . DP=12;AF1=1;AC1=2;DP4=0,0,7,5;MQ=58;FQ=-60 PL 143,33,0,138,17,135
Cf746836_TGAC_s1v1_contig_1242 2568 . C A,G 128 . DP=12;AF1=1;AC1=2;DP4=0,0,6,6;MQ=60;FQ=-60 PL 161,33,0,146,7,143
Cf746836_TGAC_s1v1_contig_1254 32707 . G C,A 199 . DP=23;AF1=1;AC1=2;DP4=0,0,10,11;MQ=60;FQ=-87 PL 232,60,0,229,45,226
Cf746836_TGAC_s1v1_contig_1254 33624 . G T,C 205 . DP=33;AF1=1;AC1=2;DP4=0,0,11,20;MQ=60;FQ=-117 PL 238,90,0,236,73,233
Cf746836_TGAC_s1v1_contig_1254 53040 . T C,G 174 . DP=46;AF1=1;AC1=2;DP4=0,0,19,24;MQ=60;FQ=-153 PL 207,126,0,191,93,188
Cf746836_TGAC_s1v1_contig_1254 53124 . T G,A 219 . DP=67;AF1=1;AC1=2;DP4=0,0,29,31;MQ=60;FQ=-205 PL 252,178,0,252,160,249
Cf746836_TGAC_s1v1_contig_1254 60010 . G A,T 215 . DP=36;AF1=1;AC1=2;DP4=0,0,17,17;MQ=60;FQ=-126 PL 248,99,0,246,82,243
Cf746836_TGAC_s1v1_contig_1266 163 . G A,C 170 . DP=27;AF1=1;AC1=2;DP4=0,0,8,14;MQ=60;FQ=-90 PL 203,63,0,191,37,188
Cf746836_TGAC_s1v1_contig_1273 12223 . A G,C 162 . DP=24;AF1=1;AC1=2;DP4=0,0,8,12;MQ=59;FQ=-84 PL 195,57,0,194,43,191
Cf746836_TGAC_s1v1_contig_1273 34139 . A G,T 137 . DP=22;AF1=1;AC1=2;DP4=0,0,9,10;MQ=60;FQ=-81 PL 170,54,0,155,27,152
Cf746836_TGAC_s1v1_contig_1273 34185 . C G,A 179 . DP=26;AF1=1;AC1=2;DP4=0,0,8,15;MQ=60;FQ=-93 PL 212,66,0,204,45,201
Cf746836_TGAC_s1v1_contig_1278 36624 . GAAAAAAAA GAAAAAAAAA,GAAAAAAAAAA 41.5 . INDEL;DP=75;AF1=1;AC1=2;DP4=1,0,40,17;MQ=60;FQ=-177;PV4=1,1,0.45,0.26 PL 82,142,0,45,59,35
Cf746836_TGAC_s1v1_contig_1278 36964 . C T,G 141 . DP=75;AF1=1;AC1=2;DP4=0,0,41,28;MQ=58;FQ=-232 PL 174,205,0,176,189,173
Cf746836_TGAC_s1v1_contig_1278 37623 . C G,A 213 . DP=106;AF1=1;AC1=2;DP4=0,0,41,54;MQ=60;FQ=-282 PL 246,255,0,244,255,241
Cf746836_TGAC_s1v1_contig_1278 38496 . T C,G 213 . DP=79;AF1=1;AC1=2;DP4=0,0,36,36;MQ=60;FQ=-241 PL 246,214,0,246,195,243
Cf746836_TGAC_s1v1_contig_1278 38514 . G A,C 222 . DP=78;AF1=1;AC1=2;DP4=0,0,34,40;MQ=60;FQ=-247 PL 255,220,0,255,193,252
Cf746836_TGAC_s1v1_contig_1278 58681 . G T,A 177 . DP=35;AF1=1;AC1=2;DP4=0,0,19,14;MQ=60;FQ=-123 PL 210,96,0,212,83,209
Cf746836_TGAC_s1v1_contig_1278 58996 . G A,T 152 . DP=36;AF1=1;AC1=2;DP4=0,0,7,25;MQ=60;FQ=-120 PL 185,93,0,183,76,180
Cf746836_TGAC_s1v1_contig_1278 59315 . T A,C 155 . DP=30;AF1=1;AC1=2;DP4=0,0,15,11;MQ=60;FQ=-102 PL 188,75,0,184,58,181
Cf746836_TGAC_s1v1_contig_1281 215 . C T,G,A 155 . DP=40;AF1=1;AC1=2;DP4=0,0,16,20;MQ=60;FQ=-129 PL 188,102,0,173,72,170,189,88,171,186
Cf746836_TGAC_s1v1_contig_1300 45798 . T G,A 135 . DP=19;AF1=1;AC1=2;DP4=0,0,4,13;MQ=60;FQ=-75 PL 168,48,0,161,29,158
Cf746836_TGAC_s1v1_contig_1303 188 . G A,T 54 . DP=55;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-63 PL 87,36,0,86,24,83
Cf746836_TGAC_s1v1_contig_1303 5401 . T A,C 109 . DP=32;AF1=1;AC1=2;DP4=0,0,25,4;MQ=59;FQ=-111 PL 142,84,0,140,67,136
Cf746836_TGAC_s1v1_contig_1303 7389 . A G,C 211 . DP=102;AF1=1;AC1=2;DP4=0,0,56,38;MQ=60;FQ=-282 PL 244,255,0,241,255,238
Cf746836_TGAC_s1v1_contig_1303 65877 . C T,G 127 . DP=13;AF1=1;AC1=2;DP4=0,0,6,6;MQ=60;FQ=-60 PL 160,33,0,158,20,155
Cf746836_TGAC_s1v1_contig_1304 619 . A G,T 174 . DP=25;AF1=1;AC1=2;DP4=0,0,12,12;MQ=60;FQ=-96 PL 207,69,0,208,56,205
Cf746836_TGAC_s1v1_contig_1304 3024 . G A,T,C 202 . DP=28;AF1=1;AC1=2;DP4=0,0,12,13;MQ=58;FQ=-96 PL 235,69,0,234,54,231,234,55,230,231
Cf746836_TGAC_s1v1_contig_1304 5160 . CTTTTTTTTTTT CTTTTTTTT,CTTTTTTTTT 212 . INDEL;DP=61;AF1=1;AC1=2;DP4=0,0,27,11;MQ=60;FQ=-143 PL 253,108,0,253,92,250
Cf746836_TGAC_s1v1_contig_1305 9857 . G C,A 111 . DP=10;AF1=1;AC1=2;DP4=0,0,5,5;MQ=60;FQ=-54 PL 144,27,0,138,11,135
Cf746836_TGAC_s1v1_contig_1316 61943 . A G,C 128 . DP=13;AF1=1;AC1=2;DP4=0,0,3,9;MQ=60;FQ=-60 PL 161,33,0,157,18,154
Cf746836_TGAC_s1v1_contig_1323 5130 . G A,T 222 . DP=44;AF1=1;AC1=2;DP4=0,0,29,15;MQ=60;FQ=-153 PL 255,126,0,255,108,252
Cf746836_TGAC_s1v1_contig_1325 90747 . TTGCA TA,T 155 . INDEL;DP=60;AF1=1;AC1=2;DP4=1,0,17,24;MQ=60;FQ=-124;PV4=0.43,0.21,1,1 PL 196,89,0,135,29,146
Cf746836_TGAC_s1v1_contig_1331 244 . T C,G 171 . DP=28;AF1=1;AC1=2;DP4=0,0,0,25;MQ=60;FQ=-99 PL 204,72,0,203,57,200
Cf746836_TGAC_s1v1_contig_1331 56319 . T A,C 134 . DP=17;AF1=1;AC1=2;DP4=0,0,9,8;MQ=60;FQ=-75 PL 167,48,0,166,35,163
Cf746836_TGAC_s1v1_contig_1331 57600 . G A,C 199 . DP=44;AF1=1;AC1=2;DP4=0,0,21,10;MQ=60;FQ=-117 PL 232,90,0,228,71,225
Cf746836_TGAC_s1v1_contig_1331 92316 . T C,A 200 . DP=41;AF1=1;AC1=2;DP4=0,0,21,15;MQ=60;FQ=-132 PL 233,105,0,229,86,226
Cf746836_TGAC_s1v1_contig_1331 95182 . T C,G 64 . DP=23;AF1=1;AC1=2;DP4=0,0,1,20;MQ=60;FQ=-87 PL 97,60,0,98,48,95
Cf746836_TGAC_s1v1_contig_1335 23250 . A G,T 219 . DP=24;AF1=1;AC1=2;DP4=0,1,5,11;MQ=60;FQ=-59;PV4=1,1,1,1 PL 252,32,0,250,32,251
Cf746836_TGAC_s1v1_contig_1335 24860 . GTTTTTTTTT GTTTTTTTTTT,GTTTTTTTTTTT 32.5 . INDEL;DP=43;AF1=1;AC1=2;DP4=1,3,17,16;MQ=60;FQ=-81.5;PV4=0.6,1,1,1 PL 73,47,0,35,1,33
Cf746836_TGAC_s1v1_contig_1339 28903 . G T,A 222 . DP=39;AF1=1;AC1=2;DP4=0,0,13,20;MQ=60;FQ=-123 PL 255,96,0,252,79,249
Cf746836_TGAC_s1v1_contig_1342 19147 . A T,G 155 . DP=57;AF1=1;AC1=2;DP4=0,0,19,31;MQ=60;FQ=-175 PL 188,148,0,184,127,181
Cf746836_TGAC_s1v1_contig_1342 19228 . T G,C 110 . DP=32;AF1=1;AC1=2;DP4=0,0,3,26;MQ=59;FQ=-111 PL 143,84,0,145,72,142
Cf746836_TGAC_s1v1_contig_1342 24202 . C T,A 137 . DP=101;AF1=1;AC1=2;DP4=0,0,24,9;MQ=60;FQ=-123 PL 170,96,0,166,77,163
Cf746836_TGAC_s1v1_contig_1342 24280 . A G,C 158 . DP=96;AF1=1;AC1=2;DP4=0,0,12,16;MQ=60;FQ=-108 PL 191,81,0,185,61,182
Cf746836_TGAC_s1v1_contig_1342 24462 . G T,A 141 . DP=30;AF1=1;AC1=2;DP4=0,0,7,21;MQ=59;FQ=-108 PL 174,81,0,175,68,172
Cf746836_TGAC_s1v1_contig_1358 86407 . A T,C 186 . DP=20;AF1=1;AC1=2;DP4=0,0,8,8;MQ=60;FQ=-72 PL 219,45,0,216,31,213
Cf746836_TGAC_s1v1_contig_1358 95780 . A C,T 109 . DP=60;AF1=1;AC1=2;DP4=0,0,10,6;MQ=51;FQ=-72 PL 142,45,0,138,30,135
Cf746836_TGAC_s1v1_contig_1365 21291 . CAAAAAAA CAAAAAAAA,CAAAAAAAAA 21.5 . INDEL;DP=12;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-61.5 PL 62,27,0,46,1,43
Cf746836_TGAC_s1v1_contig_1365 21741 . A G,T 206 . DP=21;AF1=1;AC1=2;DP4=0,0,10,10;MQ=60;FQ=-84 PL 239,57,0,230,35,227
Cf746836_TGAC_s1v1_contig_1369 14241 . G A,C 164 . DP=185;AF1=1;AC1=2;DP4=0,0,11,14;MQ=60;FQ=-99 PL 197,72,0,196,58,193
Cf746836_TGAC_s1v1_contig_1369 14413 . T C,A 65 . DP=207;AF1=1;AC1=2;DP4=0,0,4,7;MQ=59;FQ=-57 PL 98,30,0,94,16,91
Cf746836_TGAC_s1v1_contig_1369 14773 . G A,C 221 . DP=110;AF1=1;AC1=2;DP4=0,0,7,101;MQ=59;FQ=-282 PL 254,255,0,255,255,253
Cf746836_TGAC_s1v1_contig_1396 40550 . C G,T 197 . DP=11;AF1=1;AC1=2;DP4=0,0,5,5;MQ=60;FQ=-54 PL 230,27,0,227,14,224
Cf746836_TGAC_s1v1_contig_1396 52355 . T A,G 110 . DP=15;AF1=1;AC1=2;DP4=0,0,7,7;MQ=56;FQ=-66 PL 143,39,0,134,19,131
Cf746836_TGAC_s1v1_contig_1396 68082 . T A,C 118 . DP=20;AF1=1;AC1=2;DP4=0,0,10,8;MQ=45;FQ=-75 PL 151,48,0,142,18,136
Cf746836_TGAC_s1v1_contig_1396 245721 . G A,T 151 . DP=14;AF1=1;AC1=2;DP4=0,0,9,1;MQ=58;FQ=-54 PL 184,27,0,179,12,176
Cf746836_TGAC_s1v1_contig_1396 245792 . A G,C 180 . DP=28;AF1=1;AC1=2;DP4=0,0,12,12;MQ=60;FQ=-96 PL 213,69,0,214,56,211
Cf746836_TGAC_s1v1_contig_1429 21506 . AA ATA,AATA 27.5 . INDEL;DP=65;AF1=1;AC1=2;DP4=0,0,37,18;MQ=60;FQ=-198 PL 68,163,0,67,144,64
Cf746836_TGAC_s1v1_contig_1429 24050 . C A,G 170 . DP=24;AF1=1;AC1=2;DP4=0,0,12,8;MQ=60;FQ=-84 PL 203,57,0,202,43,199
Cf746836_TGAC_s1v1_contig_1429 43641 . A G,T 138 . DP=19;AF1=1;AC1=2;DP4=0,0,9,8;MQ=57;FQ=-75 PL 171,48,0,158,23,155
Cf746836_TGAC_s1v1_contig_1429 45560 . C T,G 204 . DP=42;AF1=1;AC1=2;DP4=0,0,19,17;MQ=60;FQ=-132 PL 237,105,0,225,78,222
Cf746836_TGAC_s1v1_contig_1429 64179 . GTTTTTTTTTTTT GTTTTTTTTTTTTTTTT,GTTTTTTTTTTTTTTT,GTTTTTTTTTTTTTTTTT 115 . INDEL;DP=68;AF1=1;AC1=2;DP4=2,1,12,11;MQ=57;FQ=-48.5;PV4=1,1,0.26,0.3 PL 255,114,100,160,0,149,185,36,82,180
Cf746836_TGAC_s1v1_contig_1438 10055 . C T,G 169 . DP=37;AF1=1;AC1=2;DP4=1,0,2,22;MQ=54;FQ=-79;PV4=0.12,1,0.31,0.0007 PL 202,52,0,197,50,200
Cf746836_TGAC_s1v1_contig_1445 52558 . C T,A 153 . DP=16;AF1=1;AC1=2;DP4=0,0,7,6;MQ=60;FQ=-63 PL 186,36,0,181,20,178
Cf746836_TGAC_s1v1_contig_1445 58633 . G A,C 187 . DP=27;AF1=1;AC1=2;DP4=0,0,8,16;MQ=59;FQ=-96 PL 220,69,0,219,55,216
Cf746836_TGAC_s1v1_contig_1445 58723 . G A,C 127 . DP=19;AF1=1;AC1=2;DP4=0,0,11,5;MQ=60;FQ=-72 PL 160,45,0,160,34,157
Cf746836_TGAC_s1v1_contig_1467 44354 . A G,T 180 . DP=44;AF1=1;AC1=2;DP4=0,0,28,13;MQ=60;FQ=-147 PL 213,120,0,215,105,212
Cf746836_TGAC_s1v1_contig_1467 44411 . T C,A 154 . DP=49;AF1=1;AC1=2;DP4=0,0,23,21;MQ=60;FQ=-156 PL 187,129,0,184,110,181
Cf746836_TGAC_s1v1_contig_1475 2555 . C T,G 193 . DP=69;AF1=1;AC1=2;DP4=0,0,29,36;MQ=60;FQ=-220 PL 226,193,0,227,176,224
Cf746836_TGAC_s1v1_contig_1475 31047 . GAAAAAAAAAAAAA GAAAAAAAAAAA,GAAAAAAAAAA 65.5 . INDEL;DP=47;AF1=1;AC1=2;DP4=1,2,26,12;MQ=60;FQ=-102;PV4=0.26,1,1,0.091 PL 106,67,0,83,40,78
Cf746836_TGAC_s1v1_contig_1475 45052 . T C,A 126 . DP=29;AF1=1;AC1=2;DP4=0,0,19,9;MQ=60;FQ=-108 PL 159,81,0,154,61,151
Cf746836_TGAC_s1v1_contig_1475 53317 . T C,A 222 . DP=50;AF1=1;AC1=2;DP4=0,0,27,17;MQ=60;FQ=-156 PL 255,129,0,255,114,254
Cf746836_TGAC_s1v1_contig_1475 53981 . T C,G 169 . DP=45;AF1=1;AC1=2;DP4=0,0,21,12;MQ=60;FQ=-123 PL 202,96,0,203,82,200
Cf746836_TGAC_s1v1_contig_1475 54359 . G A,C 177 . DP=53;AF1=1;AC1=2;DP4=0,0,25,18;MQ=60;FQ=-153 PL 210,126,0,212,112,209
Cf746836_TGAC_s1v1_contig_1475 71518 . T C,A 157 . DP=23;AF1=1;AC1=2;DP4=0,0,9,9;MQ=60;FQ=-78 PL 190,51,0,172,21,169
Cf746836_TGAC_s1v1_contig_1475 72741 . C T,G 170 . DP=22;AF1=1;AC1=2;DP4=0,0,13,7;MQ=60;FQ=-84 PL 203,57,0,202,43,199
Cf746836_TGAC_s1v1_contig_1475 125903 . G A,C 164 . DP=61;AF1=1;AC1=2;DP4=0,0,19,31;MQ=59;FQ=-175 PL 197,148,0,194,128,191
Cf746836_TGAC_s1v1_contig_1482 37863 . T A,G 214 . DP=33;AF1=1;AC1=2;DP4=0,0,12,18;MQ=60;FQ=-114 PL 247,87,0,245,71,242
Cf746836_TGAC_s1v1_contig_1491 5407 . A G,T 179 . DP=75;AF1=1;AC1=2;DP4=0,0,43,20;MQ=60;FQ=-214 PL 212,187,0,214,171,211
Cf746836_TGAC_s1v1_contig_1505 25543 . G A,C 154 . DP=26;AF1=1;AC1=2;DP4=0,0,16,8;MQ=59;FQ=-96 PL 187,69,0,182,50,179
Cf746836_TGAC_s1v1_contig_1505 54678 . A G,T 187 . DP=127;AF1=1;AC1=2;DP4=0,0,43,73;MQ=59;FQ=-282 PL 220,255,0,222,255,219
Cf746836_TGAC_s1v1_contig_1511 11739 . T C,G 177 . DP=13;AF1=1;AC1=2;DP4=0,0,8,2;MQ=60;FQ=-54 PL 210,27,0,209,16,206
Cf746836_TGAC_s1v1_contig_1513 92 . ATTTTTTT ATTTTTTTT,ATTTTTTTTT 41.5 . INDEL;DP=12;AF1=1;AC1=2;DP4=0,0,5,5;MQ=60;FQ=-61.5 PL 82,27,0,66,1,63
Cf746836_TGAC_s1v1_contig_1523 40929 . G C,A 131 . DP=23;AF1=1;AC1=2;DP4=0,0,12,6;MQ=60;FQ=-78 PL 164,51,0,156,30,153
Cf746836_TGAC_s1v1_contig_1537 52166 . A G,T 204 . DP=13;AF1=1;AC1=2;DP4=0,0,10,3;MQ=60;FQ=-63 PL 237,36,0,222,10,219
Cf746836_TGAC_s1v1_contig_1537 60491 . G A,T 147 . DP=83;AF1=1;AC1=2;DP4=0,0,42,33;MQ=60;FQ=-250 PL 180,223,0,182,206,179
Cf746836_TGAC_s1v1_contig_1537 63758 . A G,C 144 . DP=84;AF1=1;AC1=2;DP4=0,0,30,40;MQ=60;FQ=-235 PL 177,208,0,178,191,175
Cf746836_TGAC_s1v1_contig_1537 82656 . A G,C 206 . DP=25;AF1=1;AC1=2;DP4=0,0,18,6;MQ=60;FQ=-96 PL 239,69,0,237,54,234
Cf746836_TGAC_s1v1_contig_1542 53962 . T C,A 122 . DP=10;AF1=1;AC1=2;DP4=0,0,6,4;MQ=60;FQ=-54 PL 155,27,0,149,12,146
Cf746836_TGAC_s1v1_contig_1550 24048 . C T,G 200 . DP=12;AF1=1;AC1=2;DP4=0,0,6,5;MQ=55;FQ=-57 PL 233,30,0,229,16,226
Cf746836_TGAC_s1v1_contig_1562 4851 . C T,G 160 . DP=26;AF1=1;AC1=2;DP4=0,0,12,13;MQ=60;FQ=-99 PL 193,72,0,177,42,174
Cf746836_TGAC_s1v1_contig_1567 17147 . GTTTTTTT GTTTTTTTT,GTTTTTTTTT 39.5 . INDEL;DP=13;AF1=1;AC1=2;DP4=0,0,7,4;MQ=60;FQ=-64.5 PL 80,30,0,64,4,61
Cf746836_TGAC_s1v1_contig_1583 31639 . T TA,TTA 168 . INDEL;DP=25;AF1=1;AC1=2;DP4=0,0,6,8;MQ=60;FQ=-67.5 PL 245,69,36,202,0,193
Cf746836_TGAC_s1v1_contig_1583 31661 . T G,A 173 . DP=24;AF1=1;AC1=2;DP4=0,0,6,11;MQ=60;FQ=-75 PL 206,48,0,198,28,195
Cf746836_TGAC_s1v1_contig_1585 26942 . T C,G 212 . DP=25;AF1=1;AC1=2;DP4=0,0,11,12;MQ=60;FQ=-93 PL 245,66,0,244,52,241
Cf746836_TGAC_s1v1_contig_1585 113497 . A G,C 113 . DP=13;AF1=1;AC1=2;DP4=0,0,11,2;MQ=60;FQ=-63 PL 146,36,0,141,20,138
Cf746836_TGAC_s1v1_contig_1585 155614 . G C,T 132 . DP=13;AF1=1;AC1=2;DP4=0,0,8,4;MQ=60;FQ=-60 PL 165,33,0,165,22,162
Cf746836_TGAC_s1v1_contig_1593 65177 . G A,C 90 . DP=11;AF1=1;AC1=2;DP4=0,0,7,4;MQ=59;FQ=-57 PL 123,30,0,120,17,117
Cf746836_TGAC_s1v1_contig_1618 59575 . G A,C 187 . DP=20;AF1=1;AC1=2;DP4=0,0,8,12;MQ=59;FQ=-81 PL 220,54,0,214,26,208
Cf746836_TGAC_s1v1_contig_1618 59792 . ATTTTTT ATTTTTTT,ATTTTTTTT 109 . INDEL;DP=24;AF1=1;AC1=2;DP4=0,0,9,11;MQ=60;FQ=-91.5 PL 150,57,0,133,27,130
Cf746836_TGAC_s1v1_contig_1622 29207 . G A,C 39 . DP=10;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-51 PL 79,31,7,65,0,59
Cf746836_TGAC_s1v1_contig_1625 42933 . C T,A 145 . DP=115;AF1=1;AC1=2;DP4=0,0,25,51;MQ=60;FQ=-253 PL 178,226,0,180,209,177
Cf746836_TGAC_s1v1_contig_1642 32425 . G T,A 212 . DP=34;AF1=1;AC1=2;DP4=0,0,14,18;MQ=60;FQ=-120 PL 245,93,0,242,76,239
Cf746836_TGAC_s1v1_contig_1642 32752 . C T,A 181 . DP=27;AF1=1;AC1=2;DP4=0,0,11,14;MQ=60;FQ=-99 PL 214,72,0,216,60,213
Cf746836_TGAC_s1v1_contig_1651 12727 . T C,A 142 . DP=47;AF1=1;AC1=2;DP4=0,0,8,33;MQ=60;FQ=-147 PL 175,120,0,177,106,174
Cf746836_TGAC_s1v1_contig_1651 37661 . G A,C 104 . DP=11;AF1=1;AC1=2;DP4=0,0,6,5;MQ=60;FQ=-57 PL 137,30,0,136,18,133
Cf746836_TGAC_s1v1_contig_1651 51226 . G C,A 222 . DP=64;AF1=1;AC1=2;DP4=0,0,35,27;MQ=60;FQ=-211 PL 255,184,0,244,156,241
Cf746836_TGAC_s1v1_contig_1651 52379 . A G,C 182 . DP=38;AF1=1;AC1=2;DP4=0,0,24,11;MQ=60;FQ=-129 PL 215,102,0,216,88,213
Cf746836_TGAC_s1v1_contig_1656 735 . T C,G 119 . DP=11;AF1=1;AC1=2;DP4=0,0,7,4;MQ=58;FQ=-57 PL 152,30,0,148,16,145
Cf746836_TGAC_s1v1_contig_1665 9256 . G A,C 182 . DP=22;AF1=1;AC1=2;DP4=0,0,8,14;MQ=60;FQ=-90 PL 215,63,0,214,49,211
Cf746836_TGAC_s1v1_contig_1666 1647 . G A,T 190 . DP=77;AF1=1;AC1=2;DP4=0,0,21,47;MQ=60;FQ=-229 PL 223,202,0,215,176,212
Cf746836_TGAC_s1v1_contig_1666 26269 . GAAAAAAAA GAAAAAAAAAA,GAAAAAAAAAAA 188 . INDEL;DP=31;AF1=1;AC1=2;DP4=0,0,12,9;MQ=60;FQ=-94.5 PL 229,60,0,208,26,205
Cf746836_TGAC_s1v1_contig_1704 40436 . T C,A 86 . DP=12;AF1=1;AC1=2;DP4=0,0,7,4;MQ=60;FQ=-57 PL 119,30,0,109,10,106
Cf746836_TGAC_s1v1_contig_1704 51153 . T A,G 208 . DP=243;AF1=1;AC1=2;DP4=0,0,117,7;MQ=60;FQ=-282 PL 241,255,0,241,255,238
Cf746836_TGAC_s1v1_contig_1704 51378 . A G,T 189 . DP=389;AF1=1;AC1=2;DP4=0,0,163,163;MQ=60;FQ=-282 PL 222,255,0,219,255,216
Cf746836_TGAC_s1v1_contig_1720 58612 . C T,G 56 . DP=11;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-54 PL 89,27,0,80,8,77
Cf746836_TGAC_s1v1_contig_1720 63087 . T A,G 137 . DP=16;AF1=1;AC1=2;DP4=0,0,10,4;MQ=60;FQ=-66 PL 170,39,0,163,21,160
Cf746836_TGAC_s1v1_contig_1720 63201 . C T,G 158 . DP=39;AF1=1;AC1=2;DP4=0,0,18,18;MQ=59;FQ=-132 PL 191,105,0,193,91,190
Cf746836_TGAC_s1v1_contig_1720 65002 . T C,G 158 . DP=24;AF1=1;AC1=2;DP4=0,0,5,19;MQ=60;FQ=-96 PL 191,69,0,187,52,184
Cf746836_TGAC_s1v1_contig_1720 65812 . C A,G 163 . DP=77;AF1=1;AC1=2;DP4=0,0,32,37;MQ=59;FQ=-232 PL 196,205,0,198,188,195
Cf746836_TGAC_s1v1_contig_1724 4339 . T A,C 190 . DP=121;AF1=1;AC1=2;DP4=0,0,20,80;MQ=60;FQ=-282 PL 223,255,0,226,255,220
Cf746836_TGAC_s1v1_contig_1724 7675 . T G,A 217 . DP=165;AF1=1;AC1=2;DP4=0,0,29,125;MQ=60;FQ=-282 PL 250,255,0,252,255,249
Cf746836_TGAC_s1v1_contig_1731 82981 . C T,G 114 . DP=10;AF1=1;AC1=2;DP4=0,0,4,6;MQ=60;FQ=-54 PL 147,27,0,142,12,139
Cf746836_TGAC_s1v1_contig_1731 88384 . A G,T 181 . DP=11;AF1=1;AC1=2;DP4=0,0,4,6;MQ=60;FQ=-54 PL 214,27,0,209,12,206
Cf746836_TGAC_s1v1_contig_1731 277372 . C A,G 143 . DP=53;AF1=1;AC1=2;DP4=0,0,17,27;MQ=60;FQ=-156 PL 176,129,0,176,113,173
Cf746836_TGAC_s1v1_contig_1770 2373 . G A,C 143 . DP=15;AF1=1;AC1=2;DP4=0,0,9,4;MQ=60;FQ=-63 PL 176,36,0,159,8,156
Cf746836_TGAC_s1v1_contig_1824 168619 . G A,C 218 . DP=41;AF1=1;AC1=2;DP4=0,0,21,18;MQ=60;FQ=-141 PL 251,114,0,252,100,249
Cf746836_TGAC_s1v1_contig_1824 202261 . C T,A 199 . DP=64;AF1=1;AC1=2;DP4=0,0,19,42;MQ=60;FQ=-208 PL 232,181,0,234,165,231
Cf746836_TGAC_s1v1_contig_1824 218368 . C T,A 197 . DP=54;AF1=1;AC1=2;DP4=0,0,28,21;MQ=60;FQ=-171 PL 230,144,0,232,130,229
Cf746836_TGAC_s1v1_contig_1868 7447 . G A,C 148 . DP=20;AF1=1;AC1=2;DP4=0,0,13,4;MQ=60;FQ=-75 PL 181,48,0,181,36,178
Cf746836_TGAC_s1v1_contig_1895 2987 . A G,T 124 . DP=98;AF1=1;AC1=2;DP4=1,1,2,87;MQ=59;FQ=-262;PV4=0.065,5.9e-10,1,1 PL 157,235,0,160,248,156
Cf746836_TGAC_s1v1_contig_1897 8559 . GAAAAAAA GAAAAAAAA,GAAAAAAAAA 36.5 . INDEL;DP=16;AF1=1;AC1=2;DP4=0,0,3,7;MQ=60;FQ=-61.5 PL 77,27,0,61,1,58
Cf746836_TGAC_s1v1_contig_1908 16645 . T C,A 192 . DP=55;AF1=1;AC1=2;DP4=0,0,27,19;MQ=60;FQ=-162 PL 225,135,0,227,121,224
Cf746836_TGAC_s1v1_contig_1909 18712 . C G,A 222 . DP=73;AF1=1;AC1=2;DP4=0,0,43,24;MQ=60;FQ=-226 PL 255,199,0,248,164,245
Cf746836_TGAC_s1v1_contig_1990 13864 . G C,A 103 . DP=12;AF1=1;AC1=2;DP4=0,0,9,3;MQ=60;FQ=-60 PL 136,33,0,129,15,126
Cf746836_TGAC_s1v1_contig_1993 19370 . T C,G 195 . DP=79;AF1=1;AC1=2;DP4=0,0,46,28;MQ=60;FQ=-247 PL 228,220,0,227,201,224
Cf746836_TGAC_s1v1_contig_1993 29933 . G T,A 178 . DP=28;AF1=1;AC1=2;DP4=0,0,11,14;MQ=60;FQ=-99 PL 211,72,0,204,52,201
Cf746836_TGAC_s1v1_contig_1993 29978 . A G,T 206 . DP=30;AF1=1;AC1=2;DP4=0,0,10,19;MQ=60;FQ=-111 PL 239,84,0,240,71,237
Cf746836_TGAC_s1v1_contig_1993 67787 . T C,G 72 . DP=44;AF1=1;AC1=2;DP4=0,0,43,0;MQ=59;FQ=-153 PL 105,126,0,107,112,104
Cf746836_TGAC_s1v1_contig_2017 137360 . G T,C 149 . DP=17;AF1=1;AC1=2;DP4=0,0,9,7;MQ=60;FQ=-72 PL 182,45,0,179,31,176
Cf746836_TGAC_s1v1_contig_2017 171155 . ATTTTTTTTT ATTTTTTTTTTTT,ATTTTTTTTTTT,ATTTTTTTTTTTTT 169 . INDEL;DP=28;AF1=1;AC1=2;DP4=0,0,6,12;MQ=59;FQ=-67.5 PL 255,78,45,220,0,205,207,5,152,201
Cf746836_TGAC_s1v1_contig_2017 173496 . T A,C 200 . DP=24;AF1=1;AC1=2;DP4=0,0,12,10;MQ=60;FQ=-90 PL 233,63,0,233,50,230
Cf746836_TGAC_s1v1_contig_2017 174202 . T C,A 154 . DP=41;AF1=1;AC1=2;DP4=0,0,18,17;MQ=60;FQ=-129 PL 187,102,0,175,74,172
Cf746836_TGAC_s1v1_contig_2017 175058 . G A,T 217 . DP=50;AF1=1;AC1=2;DP4=0,0,23,24;MQ=60;FQ=-165 PL 250,138,0,252,124,249
Cf746836_TGAC_s1v1_contig_2058 73282 . CAAAAAAAAAAA CAGAAAAAAAAAAA,CAAAAAAAAAAAA,CAGAAAAAAAAAAAA 56.9 . INDEL;DP=89;AF1=1;AC1=2;DP4=1,2,8,8;MQ=60;FQ=-47.5;PV4=1,1,1,0.079 PL 97,13,0,96,8,94,95,18,95,93