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DESCRIPTION
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DESCRIPTION
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Package: RNAprobR
Title: An R package for analysis of massive parallel sequencing based RNA
structure probing data
Version: 1.9.0
Date: 2017-10-27
Authors@R: c(person("Lukasz Jan", "Kielpinski", role=c("aut"),
email="kielpinski@bio.ku.dk"), person("Nikos", "Sidiropoulos",
role=c("cre", "aut"), email="nikos.sidiro@gmail.com"), person("Jeppe",
"Vinther", role="aut", email="jvinther@bio.ku.dk"))
Description: This package facilitates analysis of Next Generation Sequencing
data for which positional information with a single nucleotide resolution
is a key. It allows for applying different types of relevant
normalizations, data visualization and export in a table or UCSC
compatible bedgraph file.
Depends:
R (>= 3.4.0),
GenomicFeatures(>= 1.16.3),
plyr(>= 1.8.1),
BiocGenerics(>= 0.10.0)
Imports:
Biostrings(>= 2.32.1),
GenomicRanges(>= 1.16.4),
IRanges(>= 2.10.5),
Rsamtools(>= 1.16.1),
rtracklayer(>= 1.24.2),
GenomicAlignments(>= 1.5.12),
S4Vectors(>= 0.14.7),
graphics,
stats,
utils
Suggests:
BiocStyle
License: GPL (>=2)
LazyData: true
biocViews: Coverage, Normalization, Sequencing, GenomeAnnotation