AttributeError: module 'genomics' has no attribute 'SampleData'

[Elahep]

Hi Simon,

When running popgenWindows.py I get the attribute error:

Traceback (most recent call last):
File "./popgenWindows.py", line 300, in
sampleData = genomics.SampleData(indNames = allInds, popNames = popNames, popInds = popInds, ploidyDict = ploidyDict)
AttributeError: module 'genomics' has no attribute 'SampleData'

Before running the code I pip installed pygenomics. Is there any other package that I need to install to solve this error?

Thanks a lot!
Elahe

[simonhmartin]

Hi Elahe,
The genomics module is the script genomics.py in genomics_general. If you download the whole directory you will get it. You then need to make sure it is in the same directory as the popgenWindows.py script, or in your PYTHONPATH.
Best wishes,
Simon