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  1. sdp_kmeans sdp_kmeans Public

    Python 11 1

  2. jp_gene_viz jp_gene_viz Public

    A collection of visualizations for genomics related information for use with Jupyter notebooks.

    Jupyter Notebook 10 9

  3. NNQP NNQP Public

    Efficient numba based implementation of a nonnegative quadratic programming solver

    Python 8 3

  4. inferelator_ng inferelator_ng Public

    Inferelator refactor and generalization.

    Python 7 14

  5. hydrogen-benchmark-PRX hydrogen-benchmark-PRX Public

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  6. pipeline pipeline Public

    validated, scalable, minimalist variant detection pipeline

    Makefile 5 1

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  • spectrum-drug-tracker Public

    Python files and datasets underlying the Spectrum Drug Tracker.

    Jupyter Notebook 5 MIT 1 0 0 Updated Jun 1, 2022
  • jp_gene_viz Public

    A collection of visualizations for genomics related information for use with Jupyter notebooks.

    Jupyter Notebook 10 9 6 0 Updated Feb 28, 2022
  • Th17_TRN_Networks Public

    Data and notebooks for "Leveraging ATAC-seq data for transcriptional regulatory inference in Th17 Cells" by Miraldi et al.

    Jupyter Notebook 1 Apache-2.0 1 0 0 Updated Feb 20, 2019
  • regulatory_network_examples Public

    Some regulatory network examples. You may need passwords to decrypt some data files.

    Jupyter Notebook 1 1 0 0 Updated Jan 19, 2018
  • simons_jupyterhub Public

    A collection of configurations and related information for creating a Jupyterhub instance for Simons Foundation.

    Jupyter Notebook 1 BSD-3-Clause 0 0 0 Updated Jul 14, 2017
  • yeast_regulatory_network Public

    Regulatory network visualization and workflow tools specialized for analysis of yeast biology.

    Jupyter Notebook 1 0 0 0 Updated Apr 7, 2017
  • SourceExtraction Public Forked from soudry/SourceExtraction

    Extraction of neural (and dendrite) activity from 3D calcium videos

    Jupyter Notebook 0 1 0 0 Updated Mar 20, 2017
  • Tr1_batfKO Public

    Critical role of the transcription factors IRF1 and BATF in preparing the chromatin landscape during Type 1 regulatory cell differentiation

    Jupyter Notebook 0 BSD-2-Clause 0 0 0 Updated Dec 23, 2016
  • DCquantAtacNetworks Public
    Jupyter Notebook 0 0 0 0 Updated Apr 18, 2016

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