/
container.yaml
70 lines (70 loc) · 3.09 KB
/
container.yaml
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url: https://biocontainers.pro/tools/datma
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for datma
latest:
2.0--hdfd78af_0: sha256:e62a96f83c898755af00b7c25da2f3037fefa1d741f4aa42b1192ef1a7d85089
tags:
2.0--hdfd78af_0: sha256:e62a96f83c898755af00b7c25da2f3037fefa1d741f4aa42b1192ef1a7d85089
docker: quay.io/biocontainers/datma
aliases:
assembly_annotation_tool.py: /usr/local/bin/assembly_annotation_tool.py
assembly_annotation_tool_seq.py: /usr/local/bin/assembly_annotation_tool_seq.py
binning: /usr/local/bin/binning
binning_tool.py: /usr/local/bin/binning_tool.py
checkm: /usr/local/bin/checkm
clame: /usr/local/bin/clame
datma.py: /usr/local/bin/datma.py
datma_seq.py: /usr/local/bin/datma_seq.py
exportTools.sh: /usr/local/bin/exportTools.sh
filterQuality.py: /usr/local/bin/filterQuality.py
finalReport.py: /usr/local/bin/finalReport.py
finalReport2.py: /usr/local/bin/finalReport2.py
flash2: /usr/local/bin/flash2
genFm9: /usr/local/bin/genFm9
general.py: /usr/local/bin/general.py
icarus.py: /usr/local/bin/icarus.py
kaiju: /usr/local/bin/kaiju
kaiju-addTaxonNames: /usr/local/bin/kaiju-addTaxonNames
kaiju-convertMAR.py: /usr/local/bin/kaiju-convertMAR.py
kaiju-convertNR: /usr/local/bin/kaiju-convertNR
kaiju-excluded-accessions.txt: /usr/local/bin/kaiju-excluded-accessions.txt
kaiju-gbk2faa.pl: /usr/local/bin/kaiju-gbk2faa.pl
kaiju-makedb: /usr/local/bin/kaiju-makedb
kaiju-mergeOutputs: /usr/local/bin/kaiju-mergeOutputs
kaiju-mkbwt: /usr/local/bin/kaiju-mkbwt
kaiju-mkfmi: /usr/local/bin/kaiju-mkfmi
kaiju-multi: /usr/local/bin/kaiju-multi
kaiju-taxonlistEuk.tsv: /usr/local/bin/kaiju-taxonlistEuk.tsv
kaiju2krona: /usr/local/bin/kaiju2krona
kaiju2table: /usr/local/bin/kaiju2table
kaijup: /usr/local/bin/kaijup
kaijux: /usr/local/bin/kaijux
ktClassifyHits: /usr/local/bin/ktClassifyHits
ktImportHits: /usr/local/bin/ktImportHits
map_genFm9.py: /usr/local/bin/map_genFm9.py
mapping: /usr/local/bin/mapping
mergeNotCombined: /usr/local/bin/mergeNotCombined
merge_tool.py: /usr/local/bin/merge_tool.py
metaquast: /usr/local/bin/metaquast
metaquast.py: /usr/local/bin/metaquast.py
quast: /usr/local/bin/quast
quast-download-busco: /usr/local/bin/quast-download-busco
quast-download-gridss: /usr/local/bin/quast-download-gridss
quast-download-silva: /usr/local/bin/quast-download-silva
quast-lg.py: /usr/local/bin/quast-lg.py
quast.py: /usr/local/bin/quast.py
rapifilt: /usr/local/bin/rapifilt
rdp_classifier: /usr/local/bin/rdp_classifier
removal_tool.py: /usr/local/bin/removal_tool.py
runDATMA.sh: /usr/local/bin/runDATMA.sh
selectFasta: /usr/local/bin/selectFasta
megahit_core: /usr/local/bin/megahit_core
megahit_core_no_hw_accel: /usr/local/bin/megahit_core_no_hw_accel
megahit_core_popcnt: /usr/local/bin/megahit_core_popcnt
circos: /usr/local/bin/circos
circos.exe: /usr/local/bin/circos.exe
compile.bat: /usr/local/bin/compile.bat
compile.make: /usr/local/bin/compile.make
gddiag: /usr/local/bin/gddiag
glimmerhmm: /usr/local/bin/glimmerhmm
glimmhmm.pl: /usr/local/bin/glimmhmm.pl