/
container.yaml
41 lines (41 loc) · 2.17 KB
/
container.yaml
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url: https://biocontainers.pro/tools/discasm
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for discasm
latest:
0.1.3--1: sha256:4705304b412ee9da1709ac422adfb1fe4680d4ae97f01046d16be6f4dcc9f4ca
tags:
0.1.3--1: sha256:4705304b412ee9da1709ac422adfb1fe4680d4ae97f01046d16be6f4dcc9f4ca
docker: quay.io/biocontainers/discasm
aliases:
DISCASM: /usr/local/bin/DISCASM
PtR: /usr/local/bin/PtR
Trinity: /usr/local/bin/Trinity
TrinityStats.pl: /usr/local/bin/TrinityStats.pl
Trinity_gene_splice_modeler.py: /usr/local/bin/Trinity_gene_splice_modeler.py
abundance_estimates_to_matrix.pl: /usr/local/bin/abundance_estimates_to_matrix.pl
align_and_estimate_abundance.pl: /usr/local/bin/align_and_estimate_abundance.pl
analyze_blastPlus_topHit_coverage.pl: /usr/local/bin/analyze_blastPlus_topHit_coverage.pl
analyze_diff_expr.pl: /usr/local/bin/analyze_diff_expr.pl
contig_ExN50_statistic.pl: /usr/local/bin/contig_ExN50_statistic.pl
define_clusters_by_cutting_tree.pl: /usr/local/bin/define_clusters_by_cutting_tree.pl
extract_supertranscript_from_reference.py: /usr/local/bin/extract_supertranscript_from_reference.py
filter_low_expr_transcripts.pl: /usr/local/bin/filter_low_expr_transcripts.pl
get_Trinity_gene_to_trans_map.pl: /usr/local/bin/get_Trinity_gene_to_trans_map.pl
insilico_read_normalization.pl: /usr/local/bin/insilico_read_normalization.pl
oases: /usr/local/bin/oases
oases_pipeline.py: /usr/local/bin/oases_pipeline.py
retrieve_sequences_from_fasta.pl: /usr/local/bin/retrieve_sequences_from_fasta.pl
run_DE_analysis.pl: /usr/local/bin/run_DE_analysis.pl
run_DE_analysis_from_samples_file.pl: /usr/local/bin/run_DE_analysis_from_samples_file.pl
seqtk-trinity: /usr/local/bin/seqtk-trinity
sift_bam_max_cov.pl: /usr/local/bin/sift_bam_max_cov.pl
salmon: /usr/local/bin/salmon
STAR: /usr/local/bin/STAR
STARlong: /usr/local/bin/STARlong
velvetg: /usr/local/bin/velvetg
velveth: /usr/local/bin/velveth
giffilter: /usr/local/bin/giffilter
gifsponge: /usr/local/bin/gifsponge
bowtie-align-l: /usr/local/bin/bowtie-align-l
bowtie-align-s: /usr/local/bin/bowtie-align-s
bowtie-build-l: /usr/local/bin/bowtie-build-l